Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0154
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 64 1e-10
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 60 2e-09
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 55 7e-08
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 54 1e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 54 1e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 52 4e-07
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 51 1e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 40 0.002
SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5) 35 0.059
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 33 0.24
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 33 0.32
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 30 1.7
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 9.0
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +3
Query: 246 DKFQV-NLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCNPD 422
DK ++ LDV+++ PEEIS+K G + ++ KH + + EHGY + F R Y LP+ +
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKH-KSEGEHGYETSEFHRSYNLPDGVDVS 96
Query: 423 TVESRLSSDGVLTVIA 470
TV SR++ DG+L + A
Sbjct: 97 TVSSRITGDGLLHIEA 112
Score = 30.3 bits (65), Expect(2) = 0.21
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 387 RRYALPENCNPDTVESRLSSDGVLTVIAPXTPAATKNERAVPI 515
R + LP++ + D++ SRL DG L + A T +ER V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNI 203
Score = 21.8 bits (44), Expect(2) = 0.21
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 222 GSTITXNKDKFQVNLDVQHFSPE 290
G + +F V LDV FSP+
Sbjct: 133 GDIAKIDDKRFTVTLDVSSFSPD 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Frame = +3
Query: 246 DKFQV-NLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCNPD 422
DKFQ+ LDV+ F PEEI+ K +G + V + E G+ S F R Y LPE +
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGLQ-RHESEEGFDSKEFRRCYNLPEGVDES 62
Query: 423 TVESRLSSDGVLTVIA-PXTPAATKNERAVPITQ 521
++ +R++ DG+L V A +P AT +A P T+
Sbjct: 63 SISTRIAEDGMLHVEALKKSPPATTENKA-PATK 95
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 234 TXNKDKFQVNLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXX-FTRRYALPEN 410
T + KF + LDV F PEE+ VK + V + + +EHG+ + F R + LP
Sbjct: 94 TKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRAR--QECEEHGFFTARQFNRHFVLPRE 151
Query: 411 CNPDTVESRLSSDGVLTVIAPXTP 482
+ DT+ RL DGVL + A P
Sbjct: 152 VDMDTLVPRLGKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 54.8 bits (126), Expect = 7e-08
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +3
Query: 264 LDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCNPDTVESRLS 443
LDV+ + PEEIS K +G V V+ +H + E G+ F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRHV-NEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 444 SDGVLTVIA 470
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 48.4 bits (110), Expect = 6e-06
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +3
Query: 243 KDKFQVNLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCNPD 422
+DKF + +DV F PE I V+ ++V H + H Y + F R++ LP + D
Sbjct: 95 EDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMD 153
Query: 423 TVESRLSSDGVL 458
++ +RL +G L
Sbjct: 154 SLTTRLDKEGKL 165
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 240 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCN 416
N++K ++ LDV+ + PEEIS K +G+V V+ +H + G+ F R +ALPE
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHV-NEGPFGFELKEFRRTFALPEGVE 61
Query: 417 PDTVESRLSSDGVLTVIA 470
V++R+S+ G L + A
Sbjct: 62 ASNVKTRISNHGQLHIEA 79
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/86 (29%), Positives = 42/86 (48%)
Frame = +3
Query: 201 AIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXX 380
A+ D G + DKF + +DV F P+ I V+ ++V H + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 381 FTRRYALPENCNPDTVESRLSSDGVL 458
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 240 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCN 416
N++K ++ LDV+ + PEEIS K +G+V V+ +H + G+ F R +ALPE
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHV-NEGPFGFELKEFRRTFALPEGVE 61
Query: 417 PDTVESRLSSDGVLTVIA 470
V++R+S+ G L + A
Sbjct: 62 ASNVKTRISNHGQLHIEA 79
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/86 (29%), Positives = 42/86 (48%)
Frame = +3
Query: 201 AIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXX 380
A+ D G + DKF + +DV F P+ I V+ ++V H + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 381 FTRRYALPENCNPDTVESRLSSDGVL 458
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 240 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCN 416
N++K ++ LDV+ + PEEIS K +G+V V+ +H + G+ F R + LPE
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHV-NEGPFGFELKEFRRTFTLPEGVE 61
Query: 417 PDTVESRLSSDGVLTVIA 470
V++R+S+ G L + A
Sbjct: 62 ASNVKTRISNHGQLHIEA 79
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 246 DKFQV-NLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCNPD 422
D+ ++ LDV+ + PEEIS K +G+V V+ +H + G+ F R + LPE
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHV-NEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 423 TVESRLSSDGVLTVIA 470
V++R+S+ G L + A
Sbjct: 298 NVKTRISNHGQLHIEA 313
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/86 (29%), Positives = 42/86 (48%)
Frame = +3
Query: 201 AIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXX 380
A+ D G + DKF + +DV F P+ I V+ ++V H + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 381 FTRRYALPENCNPDTVESRLSSDGVL 458
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/86 (29%), Positives = 42/86 (48%)
Frame = +3
Query: 201 AIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXX 380
A+ D G + DKF + +DV F P+ I V+ ++V H + H Y +
Sbjct: 316 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 374
Query: 381 FTRRYALPENCNPDTVESRLSSDGVL 458
F R++ LP + D++ +RL +G L
Sbjct: 375 FNRQFVLPREVDMDSLTTRLDKEGKL 400
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 240 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCN 416
N++K ++ LDV+ + PEEIS K +G+V V+ +H + G+ F R + LPE
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHV-NEGPFGFELKEFRRTFTLPEGVE 61
Query: 417 PDTVESRLSSDGVLTVIA 470
V++R+S+ G L + A
Sbjct: 62 ASNVKTRISNHGQLHIEA 79
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/86 (29%), Positives = 42/86 (48%)
Frame = +3
Query: 201 AIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXX 380
A+ D G + DKF + +DV F P+ I V+ ++V H + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 381 FTRRYALPENCNPDTVESRLSSDGVL 458
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +3
Query: 240 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCN 416
N++K ++ LDV+ + PEEIS K +G V V+ +H + G+ F R + LPE
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHV-NEGPFGFELKEFRRTFTLPEGVE 62
Query: 417 PDTVESRLSSDGVLTVIA 470
V++R+S+ G L + A
Sbjct: 63 ASNVKTRISNHGQLHIEA 80
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 246 DKFQVNLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCNPDT 425
DKF + +DV+ F PE I V+ ++V H + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDS 155
Query: 426 VESRLSSDGVL 458
+ +RL +G L
Sbjct: 156 LTTRLDKEGKL 166
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 192 KQMAIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGYVIVEXKHXERQDEHGYI 371
K+ A ++ S T + KF + LDV F PEE+ VK + V + + +EHG+
Sbjct: 8 KKAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRAR--QECEEHGFF 65
Query: 372 -SXXFTRRYALPE 407
+ F R + LP+
Sbjct: 66 TARQFNRHFVLPQ 78
>SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5)
Length = 191
Score = 35.1 bits (77), Expect = 0.059
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 690 INXIKRSVSQARTRNANXINTRYNTF-LIHSVPRVIVL-FRCSQLPQWAP*SPSGP 529
++ IKRS T N N NTR + L H V R ++L FR LP WA P P
Sbjct: 130 LSLIKRSSQFNSTGNINYTNTRMKCYALRHCVNRAVLLKFRALSLPTWAYSIPYQP 185
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 411 CNPDTVESRLSSDGVLTVIAPXTPAATKNERAVPITQTGPVRKEIKEPTAEAESN 575
CNPD+ ++ ++S AP TP AT V T T PV + + E + N
Sbjct: 77 CNPDSGQTTVTSTAATPETAPPTPPATGAPPEVTTTPTPPVTTQQADNYQEYQLN 131
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 420 DTVESRLSSDGVLTVIAPXTPAATKNERAVPITQT-GPVRKEIKEPTAEAESNETK 584
D V ++L+ V TV+ P TP T + PI T PVR E+++ A+A ++ K
Sbjct: 329 DGVITKLTDASVYTVVIPTTPRTTTAVTS-PIPSTKSPVRIEVRKQKAKAPADTNK 383
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 330 EXKHXERQDEHGYISXXFTRRYAL 401
+ KH ER+D HGY+ T ++AL
Sbjct: 70 QVKHEEREDRHGYLKDKVTLQHAL 93
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 429 ESRLSSDGVLTVIAPXTPAATKNERAVPITQTGPVRKEIKEPTAEAESNE 578
+S SS+ AP PAA +N +A PV+K K ++E+ES+E
Sbjct: 48 DSSSSSESDSEEEAPKKPAAKQNGKAKKQNGKAPVKKAAKS-SSESESDE 96
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -2
Query: 236 GDGGTDVSIGDRHLLPRTVVISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 57
G G + S G++ + V +WR +G + RS + EV K V + +W+QR
Sbjct: 132 GSGDRERSGGEKEVETEKEVEGSRKWRREGSGDRERSGGEKEVETEKEVE--ERRKWRQR 189
>SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = +3
Query: 144 TAVITPTMSRDYYRPWKQMAIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGY 320
T + + + +P ++M + +V + + +KDK+Q+ + +Q E++ T Y
Sbjct: 140 TLTVYKSQEEAFGQPVQRMNLRGCEVTTDVNVSKDKYQIRMRLQDNEEIELACSTESQY 198
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/107 (24%), Positives = 42/107 (39%)
Frame = +3
Query: 297 SVKTADGYVIVEXKHXERQDEHGYISXXFTRRYALPENCNPDTVESRLSSDGVLTVIAPX 476
++ + DGY IVE K+ + D + + +N + + + S+ G AP
Sbjct: 449 TISSDDGYYIVEEKYRNKYD----LGDPPVFSDSPSKNKESKSTKRKKSATGGEGKEAPA 504
Query: 477 TPAATKNERAVPITQTGPVRKEIKEPTAEAESNETKQ*LSERCESKK 617
N+ P + E K AE E + KQ + E E KK
Sbjct: 505 KKKQKHNDGDAPKKSKKKLTHEEKLKLAEEEKEKKKQQIQEDKEKKK 551
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 77 GIPTEPPSRSGLRTGAYSGRS-PDGRH 154
G P+ PPSRS RT SG S D RH
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRH 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,099,009
Number of Sequences: 59808
Number of extensions: 360385
Number of successful extensions: 1144
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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