Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0139
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    31   1.2  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      28   6.7  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   8.8  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 83  SXITAVVTSQCTKNNAEDKV-PEVEAXLRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEV 259
           S    +  + CT++N  D++  E  A  +   + L   +     K   ++A P G LD+ 
Sbjct: 319 SGAARLADADCTRDNTRDRIIAECNAVRQALQDLLSEYMSHAGGK---KKAVPGGPLDKA 375

Query: 260 FKKYCDKSAQLKG 298
            +K C K++ L+G
Sbjct: 376 IEKMCSKTSGLRG 388


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 249 SAPFGLASSISVFRTFKSTSPLRQFP 172
           S PFG+ S+ S+ + F S + L++FP
Sbjct: 458 SLPFGIQSASSLVKLFLSNNKLKEFP 483


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 62  GVXADDFSXITAVVTSQCTKNNAEDKVPEVEAXLRTFGNCLKGLVDLNV-LKTEIEE 229
           G+  D +S I  +V      N A D + EVE   R        L D N  LKT + E
Sbjct: 299 GIGVDLYSIINTLVECDKKSNQAADAIKEVEKAEREVSKSETELRDFNTELKTFMRE 355


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 173 GNCLKGLVDLNVLKTEIEE 229
           GNCLKG+V++NV    IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,739,804
Number of Sequences: 59808
Number of extensions: 349530
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)