Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0375
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)                 28   4.6  
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
          Length = 159

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 457 PAQAIXIEAQERXDGSRXPLYXIFDXTKCLYCG 555
           P Q+  +    R DG   P   +F  +KC  CG
Sbjct: 110 PPQSATVSKCYRCDGKHDPRSCVFSQSKCFSCG 142


>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 457  PAQAIXIEAQERXDGSRXPLYXIFDXTKCLYCG 555
            P Q+  +    R DG   P   +F  +KC  CG
Sbjct: 1240 PPQSATVSKCYRCDGKHDPRSCVFSQSKCFSCG 1272


>SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 137 HSTAHHQKEMLRRFTHRTYLDINM*MQRNKTCLSGLCQI--GSSDNVL 274
           H+T H     + R TH T   +N+ +  N   L  LC+I  G+  NV+
Sbjct: 188 HATTHKTLPHIPRHTHITQALVNIQVNSNNGTLPLLCKIDTGAEGNVI 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,036,110
Number of Sequences: 59808
Number of extensions: 297155
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)