Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0338
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50380.1 68416.m05511 expressed protein                             32   0.39 
At5g43090.1 68418.m05260 pumilio/Puf RNA-binding domain-containi...    28   6.3  

>At3g50380.1 68416.m05511 expressed protein
          Length = 3071

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +2

Query: 110 IHTISTSYTSAISVSLRIIACCLEVDTF*ICSLYKILAPYLYTSCIKLK 256
           I +  TS  S   V   I+  CL VD F +      L  YL  SC KLK
Sbjct: 487 ISSFMTSKDSTGHVDSNIVMLCLSVDEFLVLYTVGCLTQYLSASCGKLK 535


>At5g43090.1 68418.m05260 pumilio/Puf RNA-binding domain-containing
           protein contains similarity to RNA-binding protein
          Length = 527

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 166 YNSKTHRYSASVGSGNGM-NIAVLNRVKCVS 77
           Y ++++RY  ++G GNGM N + LN V C S
Sbjct: 140 YVNQSYRYD-TIGGGNGMLNNSFLNGVPCAS 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,745,819
Number of Sequences: 28952
Number of extensions: 247160
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)