BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0287 (657 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 4.2 SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 26 5.5 SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 25 7.3 >SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non catalytic subunit Arm1|Schizosaccharomyces pombe|chr 2|||Manual Length = 811 Score = 26.2 bits (55), Expect = 4.2 Identities = 12/48 (25%), Positives = 21/48 (43%) Frame = +1 Query: 472 YLHRTIALYWL*NFXNQNLXMDPN*YKLFGPXILKVYLXXXDGLAKKP 615 Y+ ++ WL N + DP K G ++ Y+ D ++K P Sbjct: 759 YVSELLSNSWLSNLSETQVPYDPKFAKQVGEGMIDSYIQTTDAVSKLP 806 >SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 25.8 bits (54), Expect = 5.5 Identities = 8/25 (32%), Positives = 14/25 (56%) Frame = +2 Query: 326 WPLKIGLINYHYIKNYYSKWFHYNR 400 W + + +I Y +N+Y +W H R Sbjct: 275 WRVDMTMIAYETNRNFYMEWIHKKR 299 >SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 573 Score = 25.4 bits (53), Expect = 7.3 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +1 Query: 298 MHFTHYEPFVASENRFNKLSLHKKLLFKMVSL*SHASLAXYVIYHY 435 + F ++ A +N F K+S LLF + S ASL + + Y Sbjct: 134 LQFQNFSNIFAKKNLFPKVSKSDVLLFPRDAFISQASLLSLIRHEY 179 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,512,222 Number of Sequences: 5004 Number of extensions: 48467 Number of successful extensions: 127 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 127 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 297805304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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