SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0287
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   4.2  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   5.5  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   7.3  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +1

Query: 472 YLHRTIALYWL*NFXNQNLXMDPN*YKLFGPXILKVYLXXXDGLAKKP 615
           Y+   ++  WL N     +  DP   K  G  ++  Y+   D ++K P
Sbjct: 759 YVSELLSNSWLSNLSETQVPYDPKFAKQVGEGMIDSYIQTTDAVSKLP 806


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 326 WPLKIGLINYHYIKNYYSKWFHYNR 400
           W + + +I Y   +N+Y +W H  R
Sbjct: 275 WRVDMTMIAYETNRNFYMEWIHKKR 299


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 298 MHFTHYEPFVASENRFNKLSLHKKLLFKMVSL*SHASLAXYVIYHY 435
           + F ++    A +N F K+S    LLF   +  S ASL   + + Y
Sbjct: 134 LQFQNFSNIFAKKNLFPKVSKSDVLLFPRDAFISQASLLSLIRHEY 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,222
Number of Sequences: 5004
Number of extensions: 48467
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -