BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0229 (666 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 3.5 AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 6.0 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 6.0 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 6.0 >AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic acetylcholine Apisa7-2 subunit protein. Length = 461 Score = 22.6 bits (46), Expect = 3.5 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +2 Query: 467 HILXAMSEYXQVXHRMKHEPYAGELKXSTYLXNNGSPTHSS 589 H+ SE+ + R+ PY + T L NN P +SS Sbjct: 66 HLKWNASEFAGI--RVIRVPYNRVWRPDTILYNNADPQYSS 104 >AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. Length = 735 Score = 21.8 bits (44), Expect = 6.0 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -2 Query: 233 ERPKHS*TPESAQSLFIAARSSSLNGS 153 E ++S P+S L +++R S +NG+ Sbjct: 232 ESHQNSNVPKSVAGLNVSSRRSDMNGT 258 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 21.8 bits (44), Expect = 6.0 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = +1 Query: 256 PLNISWTTSTG 288 PLNI W+T+ G Sbjct: 59 PLNIDWSTADG 69 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 21.8 bits (44), Expect = 6.0 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = +1 Query: 256 PLNISWTTSTG 288 PLNI W+T+ G Sbjct: 59 PLNIDWSTADG 69 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 179,052 Number of Sequences: 438 Number of extensions: 3530 Number of successful extensions: 4 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 20099475 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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