BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0227 (654 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30) 33 0.20 SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35 SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62 SB_53788| Best HMM Match : KH_1 (HMM E-Value=0) 30 1.9 SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) 29 4.4 >SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30) Length = 379 Score = 33.1 bits (72), Expect = 0.20 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = +2 Query: 35 GCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYV 208 G + PPP P + H + + VG +IG+ GS++T I+ +GAS+ + Sbjct: 176 GGRKGKGPPP------PQPGPITSHTMTILKGAVGSIIGQKGSYITGIRQMSGASIKI 227 >SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 831 Score = 32.3 bits (70), Expect = 0.35 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +2 Query: 119 LSQNLVGLLIGKHGSFVTQIKAKTGASVYVR 211 L ++ +G++IGK G+ + I +TGA +YV+ Sbjct: 302 LKESQIGMVIGKGGNRINSIGQETGAKIYVK 332 >SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 655 Score = 31.5 bits (68), Expect = 0.62 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +2 Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVRRH-PESSKQKICAV 250 N GL+IGK G + QI A +GA V + R+ PE++ K + Sbjct: 335 NKCGLIIGKGGETIKQIIAVSGAHVELNRNVPENNPTKFFVI 376 >SB_53788| Best HMM Match : KH_1 (HMM E-Value=0) Length = 356 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/66 (21%), Positives = 31/66 (46%) Frame = +2 Query: 26 SGKGCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVY 205 SG + +PP ++ ++ + + + L+G ++GK G +T+ +GA + Sbjct: 248 SGSNLNNPMAPPTSTATSSSIQSSATL-EITVPDELIGAILGKGGKTITEFMQYSGARIQ 306 Query: 206 VRRHPE 223 V + E Sbjct: 307 VSQKGE 312 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/55 (25%), Positives = 28/55 (50%) Frame = +2 Query: 65 ASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESS 229 AS++I + + ++ + G++IGK GS + I +TGA + + + S Sbjct: 91 ASMSISFDRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQKDAES 145 >SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 500 Score = 29.1 bits (62), Expect = 3.3 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 16/108 (14%) Frame = +1 Query: 262 SEIEAALDMIXXXXXXXXXXNFSLQEISAEL------YQKLTPLIPEFLQLQLVESVNND 423 S+I++ALD I +L S + + +P +P +Q L VN Sbjct: 236 SQIKSALDSIHDRFPTVPLTRINLAATSLQAGAATPQFVNTSPAVP-CVQTVLPSMVNVS 294 Query: 424 TILTCLVSAGHFFLQ----------QPLHPTFPR*RASRLWPHVQNPV 537 ++T ++ A HFF+Q Q LH T + L P V P+ Sbjct: 295 VVVTSVIDAHHFFIQLHNDLVQRQLQQLHQTMMQCYGQGLGPVVNQPI 342 >SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1218 Score = 29.1 bits (62), Expect = 3.3 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Frame = +2 Query: 89 ETDLRIHQFVLSQNLVGLLIGK----HGSFVTQIKAKTGASVYVRRHPESSKQKICAVEE 256 E +LR+ Q + + L + K + VTQ+KAKT + +++ E +K+ VE Sbjct: 813 ELELRVQQKSVRNTELELEVAKMKIENRQLVTQLKAKTSHNTELQQEVEVLIKKLANVEN 872 Query: 257 HKVK 268 ++VK Sbjct: 873 NQVK 876 >SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) Length = 260 Score = 28.7 bits (61), Expect = 4.4 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Frame = +2 Query: 467 SSPCTPRFRADVLHGY-----GRTSRTPCAVVARPVKKELSGCXLKY 592 S+P + FR +L GY G T R PC ++PVK G Y Sbjct: 69 SNPSSLAFRLLILSGYIPLNPGPTYRYPCGACSKPVKCNQKGIQRDY 115 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,635,797 Number of Sequences: 59808 Number of extensions: 404874 Number of successful extensions: 1204 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1204 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1669334250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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