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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0227
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23177-8|AAM22054.1|  409|Caenorhabditis elegans Hypothetical pr...    48   8e-06
U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical pr...    48   8e-06
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    43   2e-04
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    43   2e-04
L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    33   0.23 
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    33   0.23 
Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical p...    32   0.31 
Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical pr...    32   0.31 
U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    31   0.71 
U97403-4|AAB52474.2|  445|Caenorhabditis elegans Hypothetical pr...    31   0.94 
Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical p...    28   1.2  
Z68222-8|CAC70146.2|  613|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z68217-10|CAC70099.2|  613|Caenorhabditis elegans Hypothetical p...    28   1.2  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF273780-1|AAG15129.1|  509|Caenorhabditis elegans nuclear recep...    27   2.0  
Z68217-4|CAA92467.2|  499|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical...    29   2.9  
AL132949-9|CAB61081.1|  254|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC006714-9|AAK29714.5|  430|Caenorhabditis elegans Patterned exp...    28   5.0  
U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U23177-8|AAM22054.1|  409|Caenorhabditis elegans Hypothetical
           protein C56G2.1b protein.
          Length = 409

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
 Frame = +2

Query: 17  SSDSGKGCSEAASPPPASLNIVPTETD-LRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193
           S DSG+     ASP    L    TE D L +++F +  +LVGL+IG  G  + ++  +T 
Sbjct: 45  SQDSGRATGPLASPHEDGLT---TEDDFLPMYEFEIPNSLVGLIIGVKGKTIKELSVRTN 101

Query: 194 ASVYVRRHPESSKQK---ICAV 250
             + +R+H E+ K K   IC V
Sbjct: 102 VRMLIRQHHETDKVKTHQICQV 123



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = +1

Query: 229 QTENMCS*R-TQSEIEAALDMIXXXXXXXXXXNFSLQEISAELY--QKLTPLIPEFLQLQ 399
           +T  +C  R  + EI   L M+            +LQ +   +        L  +   L 
Sbjct: 116 KTHQICQVRGKRDEINHCLQMLRRRFPPARFPELNLQPVVPPVLPNSNFDMLSTQPTWLT 175

Query: 400 LVESVNNDTILTCLVSAGHFFLQQPLHPTF 489
           L E +  +  ++ ++SA HFF+QQP HP+F
Sbjct: 176 LPEDIKCEVAVSSIISASHFFIQQPTHPSF 205


>U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical
           protein C56G2.1a protein.
          Length = 867

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
 Frame = +2

Query: 17  SSDSGKGCSEAASPPPASLNIVPTETD-LRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193
           S DSG+     ASP    L    TE D L +++F +  +LVGL+IG  G  + ++  +T 
Sbjct: 503 SQDSGRATGPLASPHEDGLT---TEDDFLPMYEFEIPNSLVGLIIGVKGKTIKELSVRTN 559

Query: 194 ASVYVRRHPESSKQK---ICAV 250
             + +R+H E+ K K   IC V
Sbjct: 560 VRMLIRQHHETDKVKTHQICQV 581



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = +1

Query: 229 QTENMCS*R-TQSEIEAALDMIXXXXXXXXXXNFSLQEISAELY--QKLTPLIPEFLQLQ 399
           +T  +C  R  + EI   L M+            +LQ +   +        L  +   L 
Sbjct: 574 KTHQICQVRGKRDEINHCLQMLRRRFPPARFPELNLQPVVPPVLPNSNFDMLSTQPTWLT 633

Query: 400 LVESVNNDTILTCLVSAGHFFLQQPLHPTF 489
           L E +  +  ++ ++SA HFF+QQP HP+F
Sbjct: 634 LPEDIKCEVAVSSIISASHFFIQQPTHPSF 663


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 28/85 (32%), Positives = 38/85 (44%)
 Frame = +2

Query: 14  GSSDSGKGCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193
           G+S S          PP  L I P  T+LR  +  +  +++G LIG  G  +  I   TG
Sbjct: 388 GASSSAVSAPHFIPTPPGVLQIQPGTTNLRQVRMWVPDSMIGALIGAKGKNIKMIIRDTG 447

Query: 194 ASVYVRRHPESSKQKICAVEEHKVK 268
           ASV +   PE   Q+     E K K
Sbjct: 448 ASVKIEA-PEEKTQREAEEAEKKRK 471



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 131 LVGLLIGKHGSFVTQIKAKTGASVYVRRHPE 223
           L G LIGK GS + +I  KTG ++ V ++ E
Sbjct: 285 LCGRLIGKAGSSIKEIMQKTGTNITVTKYIE 315


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 28/85 (32%), Positives = 38/85 (44%)
 Frame = +2

Query: 14  GSSDSGKGCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193
           G+S S          PP  L I P  T+LR  +  +  +++G LIG  G  +  I   TG
Sbjct: 512 GASSSAVSAPHFIPTPPGVLQIQPGTTNLRQVRMWVPDSMIGALIGAKGKNIKMIIRDTG 571

Query: 194 ASVYVRRHPESSKQKICAVEEHKVK 268
           ASV +   PE   Q+     E K K
Sbjct: 572 ASVKIEA-PEEKTQREAEEAEKKRK 595



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 131 LVGLLIGKHGSFVTQIKAKTGASVYVRRHPE 223
           L G LIGK GS + +I  KTG ++ V ++ E
Sbjct: 409 LCGRLIGKAGSSIKEIMQKTGTNITVTKYIE 439


>L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical
           protein C06G4.1 protein.
          Length = 886

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 83  PTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYV 208
           P + D  I Q  + +N+V  LIG+HG  + +I++++ A  Y+
Sbjct: 770 PADDDPGIFQVRVPENMVARLIGRHGVEINRIRSESKAKCYL 811


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211
           N VGLLIG  G+ +  ++A+TGA + +R
Sbjct: 318 NFVGLLIGPRGNTLKSLEAETGAKIIIR 345


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211
           N VGLLIG  G+ +  ++A+TGA + +R
Sbjct: 318 NFVGLLIGPRGNTLKSLEAETGAKIIIR 345


>Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical
           protein C12D8.1c protein.
          Length = 548

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAV 250
           + V+ ++ VG++IGK G  + ++  +TG  +  +   + S  + CAV
Sbjct: 189 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 235



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASV 202
           ++ + ++ VG++IG+ GS +  I+AK G  V
Sbjct: 10  KYPIPESAVGIVIGRGGSEIQGIQAKAGCRV 40


>Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical
           protein C12D8.1b protein.
          Length = 611

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAV 250
           + V+ ++ VG++IGK G  + ++  +TG  +  +   + S  + CAV
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 298



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASV 202
           ++ + ++ VG++IG+ GS +  I+AK G  V
Sbjct: 73  KYPIPESAVGIVIGRGGSEIQGIQAKAGCRV 103


>Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical
           protein C12D8.1a protein.
          Length = 589

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAV 250
           + V+ ++ VG++IGK G  + ++  +TG  +  +   + S  + CAV
Sbjct: 230 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 276



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASV 202
           ++ + ++ VG++IG+ GS +  I+AK G  V
Sbjct: 51  KYPIPESAVGIVIGRGGSEIQGIQAKAGCRV 81


>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 86  TETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAVE 253
           TE    +  ++LS+NLV ++  K   F  +I  +   +++V R  ES K+K   VE
Sbjct: 61  TEAATSLKMWMLSKNLVVIVKRKDDIFPCKILTRNPENLFVARFLESGKEKHIQVE 116


>U97403-4|AAB52474.2|  445|Caenorhabditis elegans Hypothetical
           protein T10E9.7a protein.
          Length = 445

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 107 HQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPES 226
           ++F +    +G LIGK+G+ + +IK  +   V+  R+ E+
Sbjct: 83  YKFEMPSKDIGFLIGKNGAKINEIKLSSNVDVHFERNNEN 122


>Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 28.3 bits (60), Expect(2) = 1.2
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -2

Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468
           VQ   TG     CG SR  R  G + C GC
Sbjct: 142 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 171



 Score = 20.6 bits (41), Expect(2) = 1.2
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = -2

Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
           CR C  +KC  +      V    D    N K+S   G
Sbjct: 203 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 239


>Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 28.3 bits (60), Expect(2) = 1.2
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -2

Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468
           VQ   TG     CG SR  R  G + C GC
Sbjct: 142 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 171



 Score = 20.6 bits (41), Expect(2) = 1.2
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = -2

Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
           CR C  +KC  +      V    D    N K+S   G
Sbjct: 203 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 239


>Z68222-8|CAC70146.2|  613|Caenorhabditis elegans Hypothetical
           protein F58G6.5b protein.
          Length = 613

 Score = 28.3 bits (60), Expect(2) = 1.2
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -2

Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468
           VQ   TG     CG SR  R  G + C GC
Sbjct: 124 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 153



 Score = 20.6 bits (41), Expect(2) = 1.2
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = -2

Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
           CR C  +KC  +      V    D    N K+S   G
Sbjct: 185 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 221


>Z68217-10|CAC70099.2|  613|Caenorhabditis elegans Hypothetical
           protein F58G6.5b protein.
          Length = 613

 Score = 28.3 bits (60), Expect(2) = 1.2
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -2

Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468
           VQ   TG     CG SR  R  G + C GC
Sbjct: 124 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 153



 Score = 20.6 bits (41), Expect(2) = 1.2
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = -2

Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
           CR C  +KC  +      V    D    N K+S   G
Sbjct: 185 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 221


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 125 QNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESS 229
           +  VGL+IG++G+ V  I  K+G  V V   P S+
Sbjct: 63  EQCVGLVIGRNGAEVQAISQKSGCRVQVTVQPSST 97


>AF273780-1|AAG15129.1|  509|Caenorhabditis elegans nuclear receptor
           NHR-34 protein.
          Length = 509

 Score = 27.5 bits (58), Expect(2) = 2.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 521 CGHSREARQRGNVGCRGC 468
           CG SR  R  G + C GC
Sbjct: 32  CGDSRAGRHYGTIACNGC 49



 Score = 20.6 bits (41), Expect(2) = 2.0
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = -2

Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
           CR C  +KC  +      V    D    N K+S   G
Sbjct: 81  CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 117


>Z68217-4|CAA92467.2|  499|Caenorhabditis elegans Hypothetical
           protein F58G6.5a protein.
          Length = 499

 Score = 27.5 bits (58), Expect(2) = 2.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 521 CGHSREARQRGNVGCRGC 468
           CG SR  R  G + C GC
Sbjct: 22  CGDSRAGRHYGTIACNGC 39



 Score = 20.6 bits (41), Expect(2) = 2.1
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = -2

Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369
           CR C  +KC  +      V    D    N K+S   G
Sbjct: 71  CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 107


>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
            protein R11A8.7b protein.
          Length = 2584

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 143  LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
            +IGK GS V  ++  TGA + + +  ES+KQ
Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 143  LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
            +IGK GS V  ++  TGA + + +  ES+KQ
Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838


>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
           protein R11A8.7d protein.
          Length = 1427

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
           +IGK GS V  ++  TGA + + +  ES+KQ
Sbjct: 629 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 659


>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
           protein R11A8.7c protein.
          Length = 1405

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
           +IGK GS V  ++  TGA + + +  ES+KQ
Sbjct: 629 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 659


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
            R11A8.7b protein.
          Length = 2584

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 143  LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
            +IGK GS V  ++  TGA + + +  ES+KQ
Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 143  LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235
            +IGK GS V  ++  TGA + + +  ES+KQ
Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838


>AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32a protein.
          Length = 384

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211
           N VG ++G  G  V Q++ +TG  ++VR
Sbjct: 86  NFVGRILGPRGMTVKQLEKETGCRIFVR 113


>AL132949-9|CAB61081.1|  254|Caenorhabditis elegans Hypothetical
           protein Y53F4B.11 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 41  SEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVY 205
           ++ A+PPP     VP   D  +H  V    L   + G    F  ++KAK   +VY
Sbjct: 54  AKRAAPPPG----VPDAADFPLHDIVKELGLDKPVDGTDPEFYEELKAKDANTVY 104


>AC006714-9|AAK29714.5|  430|Caenorhabditis elegans Patterned
           expression site protein 4 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 137 GLLIGKHGSFVTQIKAKTGASVYVRRH--PESSKQKI 241
           G LIGK GS +  I+  TGAS+ V     P S+++ +
Sbjct: 165 GSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAV 201


>U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical
           protein M01A10.1 protein.
          Length = 680

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 80  VPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESS 229
           V T T +      + +  VGL+IG++G  +  I  K+G  V +   P ++
Sbjct: 139 VDTSTTVIKASVSIPEESVGLVIGRNGVEIQAISQKSGCRVQIVAEPSTT 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,396
Number of Sequences: 27780
Number of extensions: 298824
Number of successful extensions: 784
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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