BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0227 (654 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U23177-8|AAM22054.1| 409|Caenorhabditis elegans Hypothetical pr... 48 8e-06 U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical pr... 48 8e-06 Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 43 2e-04 Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 43 2e-04 L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical pr... 33 0.18 AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 33 0.23 AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 33 0.23 Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 32 0.31 Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 32 0.31 Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 32 0.31 U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 31 0.71 U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical pr... 31 0.94 Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical pr... 28 1.2 Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical p... 28 1.2 Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical pr... 28 1.2 Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical p... 28 1.2 AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 30 1.6 AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear recep... 27 2.0 Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical pr... 27 2.1 Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 29 2.9 Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 29 2.9 Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 29 2.9 Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 2.9 Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 29 2.9 Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 29 2.9 AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 29 2.9 AL132949-9|CAB61081.1| 254|Caenorhabditis elegans Hypothetical ... 28 5.0 AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned exp... 28 5.0 U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical pr... 27 8.8 >U23177-8|AAM22054.1| 409|Caenorhabditis elegans Hypothetical protein C56G2.1b protein. Length = 409 Score = 47.6 bits (108), Expect = 8e-06 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%) Frame = +2 Query: 17 SSDSGKGCSEAASPPPASLNIVPTETD-LRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193 S DSG+ ASP L TE D L +++F + +LVGL+IG G + ++ +T Sbjct: 45 SQDSGRATGPLASPHEDGLT---TEDDFLPMYEFEIPNSLVGLIIGVKGKTIKELSVRTN 101 Query: 194 ASVYVRRHPESSKQK---ICAV 250 + +R+H E+ K K IC V Sbjct: 102 VRMLIRQHHETDKVKTHQICQV 123 Score = 39.1 bits (87), Expect = 0.003 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Frame = +1 Query: 229 QTENMCS*R-TQSEIEAALDMIXXXXXXXXXXNFSLQEISAELY--QKLTPLIPEFLQLQ 399 +T +C R + EI L M+ +LQ + + L + L Sbjct: 116 KTHQICQVRGKRDEINHCLQMLRRRFPPARFPELNLQPVVPPVLPNSNFDMLSTQPTWLT 175 Query: 400 LVESVNNDTILTCLVSAGHFFLQQPLHPTF 489 L E + + ++ ++SA HFF+QQP HP+F Sbjct: 176 LPEDIKCEVAVSSIISASHFFIQQPTHPSF 205 >U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical protein C56G2.1a protein. Length = 867 Score = 47.6 bits (108), Expect = 8e-06 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%) Frame = +2 Query: 17 SSDSGKGCSEAASPPPASLNIVPTETD-LRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193 S DSG+ ASP L TE D L +++F + +LVGL+IG G + ++ +T Sbjct: 503 SQDSGRATGPLASPHEDGLT---TEDDFLPMYEFEIPNSLVGLIIGVKGKTIKELSVRTN 559 Query: 194 ASVYVRRHPESSKQK---ICAV 250 + +R+H E+ K K IC V Sbjct: 560 VRMLIRQHHETDKVKTHQICQV 581 Score = 39.1 bits (87), Expect = 0.003 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Frame = +1 Query: 229 QTENMCS*R-TQSEIEAALDMIXXXXXXXXXXNFSLQEISAELY--QKLTPLIPEFLQLQ 399 +T +C R + EI L M+ +LQ + + L + L Sbjct: 574 KTHQICQVRGKRDEINHCLQMLRRRFPPARFPELNLQPVVPPVLPNSNFDMLSTQPTWLT 633 Query: 400 LVESVNNDTILTCLVSAGHFFLQQPLHPTF 489 L E + + ++ ++SA HFF+QQP HP+F Sbjct: 634 LPEDIKCEVAVSSIISASHFFIQQPTHPSF 663 >Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical protein M88.5b protein. Length = 704 Score = 43.2 bits (97), Expect = 2e-04 Identities = 28/85 (32%), Positives = 38/85 (44%) Frame = +2 Query: 14 GSSDSGKGCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193 G+S S PP L I P T+LR + + +++G LIG G + I TG Sbjct: 388 GASSSAVSAPHFIPTPPGVLQIQPGTTNLRQVRMWVPDSMIGALIGAKGKNIKMIIRDTG 447 Query: 194 ASVYVRRHPESSKQKICAVEEHKVK 268 ASV + PE Q+ E K K Sbjct: 448 ASVKIEA-PEEKTQREAEEAEKKRK 471 Score = 30.3 bits (65), Expect = 1.2 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 131 LVGLLIGKHGSFVTQIKAKTGASVYVRRHPE 223 L G LIGK GS + +I KTG ++ V ++ E Sbjct: 285 LCGRLIGKAGSSIKEIMQKTGTNITVTKYIE 315 >Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical protein M88.5a protein. Length = 828 Score = 43.2 bits (97), Expect = 2e-04 Identities = 28/85 (32%), Positives = 38/85 (44%) Frame = +2 Query: 14 GSSDSGKGCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTG 193 G+S S PP L I P T+LR + + +++G LIG G + I TG Sbjct: 512 GASSSAVSAPHFIPTPPGVLQIQPGTTNLRQVRMWVPDSMIGALIGAKGKNIKMIIRDTG 571 Query: 194 ASVYVRRHPESSKQKICAVEEHKVK 268 ASV + PE Q+ E K K Sbjct: 572 ASVKIEA-PEEKTQREAEEAEKKRK 595 Score = 30.3 bits (65), Expect = 1.2 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 131 LVGLLIGKHGSFVTQIKAKTGASVYVRRHPE 223 L G LIGK GS + +I KTG ++ V ++ E Sbjct: 409 LCGRLIGKAGSSIKEIMQKTGTNITVTKYIE 439 >L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical protein C06G4.1 protein. Length = 886 Score = 33.1 bits (72), Expect = 0.18 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = +2 Query: 83 PTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYV 208 P + D I Q + +N+V LIG+HG + +I++++ A Y+ Sbjct: 770 PADDDPGIFQVRVPENMVARLIGRHGVEINRIRSESKAKCYL 811 >AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical protein Y116A8C.32 protein. Length = 699 Score = 32.7 bits (71), Expect = 0.23 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +2 Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211 N VGLLIG G+ + ++A+TGA + +R Sbjct: 318 NFVGLLIGPRGNTLKSLEAETGAKIIIR 345 >AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein protein. Length = 699 Score = 32.7 bits (71), Expect = 0.23 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +2 Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211 N VGLLIG G+ + ++A+TGA + +R Sbjct: 318 NFVGLLIGPRGNTLKSLEAETGAKIIIR 345 >Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical protein C12D8.1c protein. Length = 548 Score = 32.3 bits (70), Expect = 0.31 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = +2 Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAV 250 + V+ ++ VG++IGK G + ++ +TG + + + S + CAV Sbjct: 189 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 235 Score = 27.5 bits (58), Expect = 8.8 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +2 Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASV 202 ++ + ++ VG++IG+ GS + I+AK G V Sbjct: 10 KYPIPESAVGIVIGRGGSEIQGIQAKAGCRV 40 >Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical protein C12D8.1b protein. Length = 611 Score = 32.3 bits (70), Expect = 0.31 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = +2 Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAV 250 + V+ ++ VG++IGK G + ++ +TG + + + S + CAV Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 298 Score = 27.5 bits (58), Expect = 8.8 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +2 Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASV 202 ++ + ++ VG++IG+ GS + I+AK G V Sbjct: 73 KYPIPESAVGIVIGRGGSEIQGIQAKAGCRV 103 >Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical protein C12D8.1a protein. Length = 589 Score = 32.3 bits (70), Expect = 0.31 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = +2 Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAV 250 + V+ ++ VG++IGK G + ++ +TG + + + S + CAV Sbjct: 230 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 276 Score = 27.5 bits (58), Expect = 8.8 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +2 Query: 110 QFVLSQNLVGLLIGKHGSFVTQIKAKTGASV 202 ++ + ++ VG++IG+ GS + I+AK G V Sbjct: 51 KYPIPESAVGIVIGRGGSEIQGIQAKAGCRV 81 >U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (ectopic expressionof hox genes) protein 3 protein. Length = 531 Score = 31.1 bits (67), Expect = 0.71 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = +2 Query: 86 TETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESSKQKICAVE 253 TE + ++LS+NLV ++ K F +I + +++V R ES K+K VE Sbjct: 61 TEAATSLKMWMLSKNLVVIVKRKDDIFPCKILTRNPENLFVARFLESGKEKHIQVE 116 >U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical protein T10E9.7a protein. Length = 445 Score = 30.7 bits (66), Expect = 0.94 Identities = 12/40 (30%), Positives = 24/40 (60%) Frame = +2 Query: 107 HQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPES 226 ++F + +G LIGK+G+ + +IK + V+ R+ E+ Sbjct: 83 YKFEMPSKDIGFLIGKNGAKINEIKLSSNVDVHFERNNEN 122 >Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical protein F58G6.5c protein. Length = 631 Score = 28.3 bits (60), Expect(2) = 1.2 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%) Frame = -2 Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468 VQ TG CG SR R G + C GC Sbjct: 142 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 171 Score = 20.6 bits (41), Expect(2) = 1.2 Identities = 11/37 (29%), Positives = 14/37 (37%) Frame = -2 Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369 CR C +KC + V D N K+S G Sbjct: 203 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 239 >Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical protein F58G6.5c protein. Length = 631 Score = 28.3 bits (60), Expect(2) = 1.2 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%) Frame = -2 Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468 VQ TG CG SR R G + C GC Sbjct: 142 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 171 Score = 20.6 bits (41), Expect(2) = 1.2 Identities = 11/37 (29%), Positives = 14/37 (37%) Frame = -2 Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369 CR C +KC + V D N K+S G Sbjct: 203 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 239 >Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical protein F58G6.5b protein. Length = 613 Score = 28.3 bits (60), Expect(2) = 1.2 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%) Frame = -2 Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468 VQ TG CG SR R G + C GC Sbjct: 124 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 153 Score = 20.6 bits (41), Expect(2) = 1.2 Identities = 11/37 (29%), Positives = 14/37 (37%) Frame = -2 Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369 CR C +KC + V D N K+S G Sbjct: 185 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 221 >Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical protein F58G6.5b protein. Length = 613 Score = 28.3 bits (60), Expect(2) = 1.2 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%) Frame = -2 Query: 551 VQRRHTGFW--TCGHSREARQRGNVGCRGC 468 VQ TG CG SR R G + C GC Sbjct: 124 VQSEFTGLKCRVCGDSRAGRHYGTIACNGC 153 Score = 20.6 bits (41), Expect(2) = 1.2 Identities = 11/37 (29%), Positives = 14/37 (37%) Frame = -2 Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369 CR C +KC + V D N K+S G Sbjct: 185 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 221 >AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical protein C36E6.1b protein. Length = 641 Score = 29.9 bits (64), Expect = 1.6 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 125 QNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESS 229 + VGL+IG++G+ V I K+G V V P S+ Sbjct: 63 EQCVGLVIGRNGAEVQAISQKSGCRVQVTVQPSST 97 >AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear receptor NHR-34 protein. Length = 509 Score = 27.5 bits (58), Expect(2) = 2.0 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = -2 Query: 521 CGHSREARQRGNVGCRGC 468 CG SR R G + C GC Sbjct: 32 CGDSRAGRHYGTIACNGC 49 Score = 20.6 bits (41), Expect(2) = 2.0 Identities = 11/37 (29%), Positives = 14/37 (37%) Frame = -2 Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369 CR C +KC + V D N K+S G Sbjct: 81 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 117 >Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical protein F58G6.5a protein. Length = 499 Score = 27.5 bits (58), Expect(2) = 2.1 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = -2 Query: 521 CGHSREARQRGNVGCRGC 468 CG SR R G + C GC Sbjct: 22 CGDSRAGRHYGTIACNGC 39 Score = 20.6 bits (41), Expect(2) = 2.1 Identities = 11/37 (29%), Positives = 14/37 (37%) Frame = -2 Query: 479 CRGC*RKKCPALTRHVNIVSLFTDSTNCNCKNSGMRG 369 CR C +KC + V D N K+S G Sbjct: 71 CRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEG 107 >Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical protein R11A8.7b protein. Length = 2584 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235 +IGK GS V ++ TGA + + + ES+KQ Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838 >Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical protein R11A8.7a protein. Length = 2606 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235 +IGK GS V ++ TGA + + + ES+KQ Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838 >Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein R11A8.7d protein. Length = 1427 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235 +IGK GS V ++ TGA + + + ES+KQ Sbjct: 629 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 659 >Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein R11A8.7c protein. Length = 1405 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235 +IGK GS V ++ TGA + + + ES+KQ Sbjct: 629 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 659 >Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein R11A8.7b protein. Length = 2584 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235 +IGK GS V ++ TGA + + + ES+KQ Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838 >Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein R11A8.7a protein. Length = 2606 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 143 LIGKHGSFVTQIKAKTGASVYVRRHPESSKQ 235 +IGK GS V ++ TGA + + + ES+KQ Sbjct: 1808 VIGKGGSNVNAVREATGAIIEINKIQESNKQ 1838 >AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical protein Y69A2AR.32a protein. Length = 384 Score = 29.1 bits (62), Expect = 2.9 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVR 211 N VG ++G G V Q++ +TG ++VR Sbjct: 86 NFVGRILGPRGMTVKQLEKETGCRIFVR 113 >AL132949-9|CAB61081.1| 254|Caenorhabditis elegans Hypothetical protein Y53F4B.11 protein. Length = 254 Score = 28.3 bits (60), Expect = 5.0 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +2 Query: 41 SEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVY 205 ++ A+PPP VP D +H V L + G F ++KAK +VY Sbjct: 54 AKRAAPPPG----VPDAADFPLHDIVKELGLDKPVDGTDPEFYEELKAKDANTVY 104 >AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned expression site protein 4 protein. Length = 430 Score = 28.3 bits (60), Expect = 5.0 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +2 Query: 137 GLLIGKHGSFVTQIKAKTGASVYVRRH--PESSKQKI 241 G LIGK GS + I+ TGAS+ V P S+++ + Sbjct: 165 GSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAV 201 >U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical protein M01A10.1 protein. Length = 680 Score = 27.5 bits (58), Expect = 8.8 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = +2 Query: 80 VPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESS 229 V T T + + + VGL+IG++G + I K+G V + P ++ Sbjct: 139 VDTSTTVIKASVSIPEESVGLVIGRNGVEIQAISQKSGCRVQIVAEPSTT 188 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,508,396 Number of Sequences: 27780 Number of extensions: 298824 Number of successful extensions: 784 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 721 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 784 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1455289764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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