BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0213 (667 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 30 1.6 At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO ... 28 4.9 At3g42722.1 68416.m04458 F-box family protein contains F-box dom... 27 8.5 >At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle Length = 1080 Score = 29.9 bits (64), Expect = 1.6 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 448 WLSDVINAWILPNGAVLQQFQVLTLRTLKQA 540 WL D+IN +P G +L Q Q+L T ++ Sbjct: 273 WLEDIINGQKVPEGYILMQKQILANDTTSES 303 >At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO Domain IPR002109, Glutaredoxin (thioltransferase) Length = 630 Score = 28.3 bits (60), Expect = 4.9 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%) Frame = +2 Query: 275 TGVPIIDQILFNEKH---LEALKKLANEDEF 358 TG + QI FNEKH L AL L N EF Sbjct: 203 TGSSQVPQIFFNEKHFGGLMALNSLRNSGEF 233 >At3g42722.1 68416.m04458 F-box family protein contains F-box domain Pfam:PF00646 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 Length = 129 Score = 27.5 bits (58), Expect = 8.5 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +3 Query: 144 LTALFASTACIDYDGFLNMKLEHSLNCNDEKFCH 245 LT AST+ + H+L+CND FCH Sbjct: 23 LTNEAASTSILSKRWRTLFAFSHNLDCNDSIFCH 56 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,248,319 Number of Sequences: 28952 Number of extensions: 153390 Number of successful extensions: 350 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 347 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 350 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1403159472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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