Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10e13
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)                   66   1e-11
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   5e-11
SB_15653| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.055
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                27   6.4  

>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
          Length = 327

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
 Frame = +1

Query: 196 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 360
           +K+   +N + R  + DGRV IG FL  D+  NVILG C E+ K     +   E EE RV
Sbjct: 30  SKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQEREEKRV 89

Query: 361 LGLVMVPGRHIVSIQID 411
           LGLV++ G H+VS+ +D
Sbjct: 90  LGLVLLRGEHLVSMTVD 106


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
 Frame = +1

Query: 169 PQVVEEEG---KAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYL 324
           P V+E E    + +L  WLN   R++++DGR LIG FLCTD+D N+ILG+C E++
Sbjct: 19  PSVIENEKSEQRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFV 73


>SB_15653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -2

Query: 251 LPSVISILNFIFNHFLSFAFPSSSTT*GASEVVLLPSLLISLA-CSNLYP*TINEFLAKV 75
           L S+ S++        +  FP        S  +L  +L+ +LA C  +YP  +  F  K 
Sbjct: 59  LASLFSLVGIAVERTYAVFFPFKHRLSKTSSYLLWITLVETLAFCRGIYPLYLF-FNGKT 117

Query: 74  WKYFYTALFCSQVHGYTIEV 15
            KY+   + CS V GYT+ +
Sbjct: 118 VKYYTMYMICSDVSGYTVSL 137


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 130  EMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRV 255
            EMS EGN T S      +EE ++   +W   K  I++ DG V
Sbjct: 1115 EMSQEGNSTVSSVATGSDEE-RSSESQWQIPKIVIQLPDGEV 1155


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 175 VVEEEGKAKLRKWLNMKFRIEM-TDGRVLIGVFLCTDRDANVILGACSE 318
           V E + K+ +   ++ K ++ + T G +L+GV     R A  +L  CSE
Sbjct: 281 VFETDIKSSVESIVSPKMKMALRTSGHLLLGVVRIYSRKAKYLLADCSE 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,075
Number of Sequences: 59808
Number of extensions: 236198
Number of successful extensions: 486
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)