BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte10e03 (553 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 240 1e-64 SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 240 1e-64 SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 153 1e-38 SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 3e-38 SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 3e-38 SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 4e-20 SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 1e-05 SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 5e-05 SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 1e-04 SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 1.8 SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 25 7.4 SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.4 SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 7.4 SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 7.4 SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 9.8 SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 9.8 >SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|Schizosaccharomyces pombe|chr 1|||Manual Length = 128 Score = 240 bits (587), Expect = 1e-64 Identities = 112/123 (91%), Positives = 116/123 (94%) Frame = +3 Query: 72 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 251 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 252 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 431 IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120 Query: 432 LRP 440 LRP Sbjct: 121 LRP 123 >SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schizosaccharomyces pombe|chr 1|||Manual Length = 128 Score = 240 bits (587), Expect = 1e-64 Identities = 112/123 (91%), Positives = 116/123 (94%) Frame = +3 Query: 72 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 251 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 252 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 431 IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120 Query: 432 LRP 440 LRP Sbjct: 121 LRP 123 >SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||Manual Length = 382 Score = 153 bits (372), Expect = 1e-38 Identities = 76/90 (84%), Positives = 82/90 (91%) Frame = +3 Query: 30 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 209 K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 122 Query: 210 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 299 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 Score = 153 bits (372), Expect = 1e-38 Identities = 76/90 (84%), Positives = 82/90 (91%) Frame = +3 Query: 30 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 209 K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 198 Query: 210 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 299 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228 Score = 153 bits (372), Expect = 1e-38 Identities = 76/90 (84%), Positives = 82/90 (91%) Frame = +3 Query: 30 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 209 K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 274 Query: 210 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 299 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304 Score = 153 bits (372), Expect = 1e-38 Identities = 76/90 (84%), Positives = 82/90 (91%) Frame = +3 Query: 30 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 209 K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 350 Query: 210 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 299 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380 Score = 152 bits (369), Expect = 3e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +3 Query: 72 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 251 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 252 IQKESTLHLVLRLRGG 299 IQKESTLHLVLRLRGG Sbjct: 61 IQKESTLHLVLRLRGG 76 >SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schizosaccharomyces pombe|chr 1|||Manual Length = 150 Score = 152 bits (369), Expect = 3e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +3 Query: 72 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 251 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 252 IQKESTLHLVLRLRGG 299 IQKESTLHLVLRLRGG Sbjct: 61 IQKESTLHLVLRLRGG 76 >SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosaccharomyces pombe|chr 1|||Manual Length = 150 Score = 152 bits (369), Expect = 3e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +3 Query: 72 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 251 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 252 IQKESTLHLVLRLRGG 299 IQKESTLHLVLRLRGG Sbjct: 61 IQKESTLHLVLRLRGG 76 >SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like protein modifier Ned8|Schizosaccharomyces pombe|chr 2|||Manual Length = 78 Score = 92.3 bits (219), Expect = 4e-20 Identities = 40/77 (51%), Positives = 57/77 (74%) Frame = +3 Query: 72 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 251 M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+ Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60 Query: 252 IQKESTLHLVLRLRGGT 302 ++ S LHLVL LRGG+ Sbjct: 61 LEGGSVLHLVLALRGGS 77 >SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pombe|chr 2|||Manual Length = 368 Score = 44.0 bits (99), Expect = 1e-05 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +3 Query: 102 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHL 278 K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + + Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71 Query: 279 VLRLRGGTIEP 311 V R + T P Sbjct: 72 VSRPKTSTSTP 82 >SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces pombe|chr 1|||Manual Length = 354 Score = 42.3 bits (95), Expect = 5e-05 Identities = 21/73 (28%), Positives = 39/73 (53%) Frame = +3 Query: 72 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 251 + + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63 Query: 252 IQKESTLHLVLRL 290 IQ ++HLV L Sbjct: 64 IQDGHSIHLVKTL 76 >SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosaccharomyces pombe|chr 1|||Manual Length = 467 Score = 40.7 bits (91), Expect = 1e-04 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = +3 Query: 99 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 272 GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67 >SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces pombe|chr 2|||Manual Length = 603 Score = 27.1 bits (57), Expect = 1.8 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = +3 Query: 75 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 248 +I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + + Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64 Query: 249 NIQKESTLHLVLRLRGGT 302 + T HLV+ + T Sbjct: 65 DATDLVTFHLVIAVFNST 82 >SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 25.0 bits (52), Expect = 7.4 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 13/116 (11%) Frame = +3 Query: 87 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA------GKQLE-------D 227 K TGKT + + + ++ K+KIQ +P + L + GK + Sbjct: 89 KNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTG 148 Query: 228 GRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRAT 395 G TL D I+ T+H+V+ G ++ + + +A C + + L P T Sbjct: 149 GTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFT 204 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 25.0 bits (52), Expect = 7.4 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -3 Query: 152 FDIFDSVGSFHLQCNGLPRKGFDEYLH 72 F ++S+G + L C + FDEYL+ Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY 2913 >SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 741 Score = 25.0 bits (52), Expect = 7.4 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = +3 Query: 45 LRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 200 L V +S + + KTL +EA++ + +K Q K +PP + L Sbjct: 618 LEVKNYSKSTDLLKKTLRIPRNDEPLEAANQFDLLKVSPQQKSEVPPKRNEL 669 >SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate synthase|Schizosaccharomyces pombe|chr 2|||Manual Length = 541 Score = 25.0 bits (52), Expect = 7.4 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 146 IFDSVGSFHLQCNGLPRKGFDEYL 75 IF VG+F C+ L ++GF E L Sbjct: 43 IFPGVGNFGFVCDSLAKQGFLEPL 66 >SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1098 Score = 24.6 bits (51), Expect = 9.8 Identities = 8/12 (66%), Positives = 10/12 (83%) Frame = -1 Query: 52 TRKIYDFLLPNW 17 TR +YD L+PNW Sbjct: 826 TRDVYDELVPNW 837 >SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces pombe|chr 2|||Manual Length = 355 Score = 24.6 bits (51), Expect = 9.8 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Frame = +3 Query: 93 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 263 L G T EV T+ + + +G P P + I A +G TL+ YN Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153 Query: 264 STLH 275 LH Sbjct: 154 QVLH 157 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,289,876 Number of Sequences: 5004 Number of extensions: 47578 Number of successful extensions: 126 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 126 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 229961028 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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