Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f11
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-04
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.034
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               34   0.059
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.73 
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               27   5.1  
SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7)           27   6.8  
SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = +3

Query: 279 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T P T  NF
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANF 58


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 34.7 bits (76), Expect = 0.034
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +3

Query: 279 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF 401
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLF 48


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 327 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
           +V  +V FD+ IG+ + G IV+ L    VP T ENF
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENF 169


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 324 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPXTTENF 434
           PK T+   FD++IG    G IV+ L    VP T ENF
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENF 35


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 334 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 233
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 334 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 233
           VTL PL +S+    ++N++   A+VRV  I  SL
Sbjct: 336 VTLSPLQVSAKTGSSLNDQAEVAMVRVSPILASL 369


>SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7)
          Length = 271

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 182 QNLRYKIRNLI*KPSQFTILLIRNNHT-VLSLASSVELDNG 63
           +N  Y ++NL  K S     L RNN   V  ++S VE D G
Sbjct: 95  KNFEYLVKNLRNKRSSLLHQLTRNNDVMVCQISSHVEQDKG 135


>SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 359 LHVKAHLMSNFRSFGNFIRFGTSDEQQN 276
           LH K   M+N  ++G F+  GT+D +QN
Sbjct: 68  LH-KTSGMTNRNAYGTFLTLGTTDNKQN 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,427,012
Number of Sequences: 59808
Number of extensions: 204326
Number of successful extensions: 346
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)