Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10f10
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    89   3e-18
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    81   6e-16
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    36   0.017
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    30   1.4  
At1g26170.1 68414.m03194 importin beta-2 subunit family protein ...    29   1.9  
At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    29   3.3  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    27   7.7  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 4/202 (1%)
 Frame = +2

Query: 2   MAGDQAQFYQLLNTLLSTDNDIRSQAEDAYN---NIPTETKVVHLVNSIQNADIAEDVRQ 172
           +  D A F  L++ L+S+ N+ RS AE  +N       +T  + L + +Q +   E  R 
Sbjct: 17  LGSDSAPFETLISHLMSSSNEQRSSAESLFNLAKQSNPDTLSLKLAHLLQLSPHPEG-RA 75

Query: 173 TAAVLLRRLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNH 352
            AAVLLR+L +              Q+ L+  +L  +Q + ++ + +K+CD VSELA   
Sbjct: 76  MAAVLLRKLLTRDDAYLWPRLSLSTQSSLKSSMLYCIQHEEAKSISKKICDTVSELASGI 135

Query: 353 IDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISA 532
           + ++G   WPE L F+F C ++  P ++E+   +   +    G   T ++  + G+ +  
Sbjct: 136 LPENG---WPELLPFVFQCVTSVTPKLQESAFLILAQLSQYVGETLTPHIKELHGVFLQC 192

Query: 533 LQPNE-SMALRTQAVKAVGAFI 595
           L  N  S  ++  A+ AV +F+
Sbjct: 193 LSSNSASSDVKIAALNAVISFV 214


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 57/200 (28%), Positives = 103/200 (51%), Gaps = 2/200 (1%)
 Frame = +2

Query: 32  LLNTLLSTDNDIRSQAEDAYNNIPTETKVVH-LVNSIQNADIAEDVRQTAAVLLRRLFSA 208
           LL   L  DND R QAED    +  + +VV  LV  ++ A    +VRQ AAVLLR+  + 
Sbjct: 8   LLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKRITG 66

Query: 209 XXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEF 388
                       +Q V ++ L+ ++ ++ S  +RR   +VVS +A+  +      +WP+ 
Sbjct: 67  HWAKLSPQL---KQHV-KQSLIESITVENSPPVRRASANVVSVVAKYAVPA---GEWPDL 119

Query: 389 LQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISALQPNESMALRTQ 568
           L F+F C+ +   + +E  + +F+S+    GN        ++ +L+  +Q   S  +R  
Sbjct: 120 LTFLFQCSQSAQEDHREVALILFSSLTETIGNTFRPYFADLQALLLKCMQDESSSRVRVA 179

Query: 569 AVKAVGAFI-LLHDKEPIIQ 625
           A+KAVG+F+   +D + +++
Sbjct: 180 ALKAVGSFLEFTNDGDEVVK 199


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 35  LNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAA 181
           +N   S  ND+  Q   A+ N+PTET + H    + NA IA DV +  A
Sbjct: 459 INDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 11  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVN 133
           D   FY L +T+L   N    +A  +Y N+ T+T  + L+N
Sbjct: 333 DFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMN 373


>At1g26170.1 68414.m03194 importin beta-2 subunit family protein
           similar to Importin9 isoform 1 [Mus musculus]
           GI:15186756; contains Pfam profile PF03810:
           Importin-beta N-terminal domain
          Length = 931

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 5/173 (2%)
 Frame = +2

Query: 11  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVH-LVNSIQNADIAEDVRQ---TA 178
           DQ      L+  L  + ++RS AE + N    +      L     N D++  +RQ   ++
Sbjct: 6   DQQWLLGCLSASLDPNQNVRSFAETSLNQASLQPGFGSALCRVAANKDLSLGLRQISFSS 65

Query: 179 AVLLRRLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHID 358
           AVLL++                  +   + L+    +       RK+C  +S    +   
Sbjct: 66  AVLLKQFIKKHWRENEEAFEYPLVSSEEKALIRGQLLGSLDDSHRKICTAISMDISSIAT 125

Query: 359 DDGNNQWPEFLQFMFTCAS-AQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIK 514
            D   +WPE + F+    S   + N     +R    + G   +++   L   K
Sbjct: 126 YDWPEEWPELVPFLLKLISDPSNTNGVHGALRCLALLSGELDDKEVPTLSYDK 178


>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 26/110 (23%), Positives = 46/110 (41%)
 Frame = +2

Query: 287 MDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSV 466
           +D+S ++  ++ DV  E+     D   + +  EF    F C+S        A  R+F  +
Sbjct: 64  VDISPFVFDRIQDV--EIGVKLFDWLSSEKKDEFFSNGFACSSFLK---LLARYRIFNEI 118

Query: 467 PGVFGNRQTENLDVIKGMLISALQPNESMALRTQAVKAVGAFILLHDKEP 616
             V GN + EN+ +    L   L         ++AV+     + L+D  P
Sbjct: 119 EDVLGNLRNENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVP 168


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 103 NRNKSSAPSEFNSKCRHCRRCASNGG 180
           N NK S P     KC++C RC ++GG
Sbjct: 37  NNNKKSQP---RYKCKNCCRCWTHGG 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,473,964
Number of Sequences: 28952
Number of extensions: 274516
Number of successful extensions: 712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)