Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e19
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31473| Best HMM Match : HATPase_c (HMM E-Value=0.0029)              34   0.068
SB_21866| Best HMM Match : UCH (HMM E-Value=0)                         31   0.84 
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_15508| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)               28   4.5  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          28   5.9  
SB_11462| Best HMM Match : UBA (HMM E-Value=1.3)                       27   7.8  
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)                    27   7.8  

>SB_31473| Best HMM Match : HATPase_c (HMM E-Value=0.0029)
          Length = 354

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +2

Query: 293 KDDEHTIQ----YLNDLDNMHKVVLEVPNEESLRKVAEKLKENSILHKLWIEQPE-NIPT 457
           + DE TIQ    ++N++ N+ K V  + +E S    +EK    SIL +L IEQ    IP 
Sbjct: 17  RTDEETIQKCIGHINEIQNIEKEVRAIAHELSNEVFSEKSNFKSILTELLIEQQNLYIPD 76

Query: 458 C 460
           C
Sbjct: 77  C 77


>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
          Length = 2165

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +2

Query: 149 AILA*NKMSNVTVQYILLRSDLLKEFGWSIGALVAQACHASSAVMHIYKDDEHTIQYLND 328
           +I+  NK+ + +V Y   R     E  W     +A+  HA+  +  + KD+ H  QY+  
Sbjct: 237 SIIKINKVIS-SVSYYTHRHTTADEEEWLTAERMAEWIHANKVLSIVLKDNLHQPQYVEK 295

Query: 329 LDNMHKVVLE 358
           L+ + + V++
Sbjct: 296 LEKIIRFVIK 305


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 347  VVLEVPNEESLRKVAEKLKENSILHK--LWIEQPENIPTCLAIKPYPKDEVKKYVGK 511
            +VLEV  E++L K+ E  K NS+L +    +E        LA K    DE+++ + K
Sbjct: 1500 IVLEVEKEQALAKLEELQKRNSLLERSAQLLESMRKENEALATKCKDADEMRRNIIK 1556


>SB_15508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 438 CSIHNLCNIEFSFNFSATFLSDSSFGTSKTTLCILS 331
           CS+H L    +      T + ++SF  S TTLC+L+
Sbjct: 32  CSVHPLICASWRNRAVFTVIKETSFSASTTTLCLLT 67


>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2143

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +2

Query: 269 SSAVMHIYKDDEHTIQYLNDLDNMHKVVLEVPNEESLRK----VAEKLKENSILHKL 427
           SS + H+Y  +  T + LN L++++  V  V  + S+RK    V EKL +N +  +L
Sbjct: 682 SSTLAHLYNQEIKTTKLLNKLNDLYVTVERVGWKMSIRKEIFNVNEKL-DNKLAQRL 737


>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
          Length = 1364

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 77  NNVYVLNAYIIMLDFIVHISTLQKAIL-A*NKMSNVTVQYILLRSDLLKEFGWSIGALVA 253
           NN  ++N     L   +  S    AI+ A NK+++  +  IL   D ++E GW+ G+ V 
Sbjct: 496 NNSDMINILKDALPRPIDCSNKGSAIIPAINKLNSARLDRILRLLDFVEEQGWTYGSAVG 555

Query: 254 QACH 265
              H
Sbjct: 556 SLDH 559


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 108 LCLILLFISQHFRKLYWHKIKCRT*LCSIYYSVVI 212
           LC +L FI+   R +Y   + CR  LC  ++S  +
Sbjct: 223 LCRVLSFIALLRRAVYCCAMSCRALLCCAFFSCAV 257


>SB_11462| Best HMM Match : UBA (HMM E-Value=1.3)
          Length = 462

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 368 EESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYP-KDEVKKYVGK 511
           +E++ K+ E +    +LH + +EQ +  PT   I P+P K E   YVGK
Sbjct: 367 DENVEKIPETVLICCVLHNICVEQED--PT--VIIPHPAKYESTPYVGK 411


>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
          Length = 495

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 368 EESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYP-KDEVKKYVGK 511
           +E++ K+ E +    +LH + +EQ +  PT   I P+P K E   YVGK
Sbjct: 351 DENVEKIPETVLICCVLHNICVEQED--PT--VIIPHPAKYESTPYVGK 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,558,471
Number of Sequences: 59808
Number of extensions: 300602
Number of successful extensions: 825
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)