Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e19
         (556 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    25   2.2  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    23   6.7  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    23   8.9  

>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +2

Query: 104 IIMLDFIVHISTLQKAILA*NKMSNVTVQYILLRSDLLKEFGWSIGALVAQACHASSAVM 283
           I M   +  I+ L  + ++ N +      Y ++   L  EFG SIG L+    +A +  M
Sbjct: 227 ICMTTVVTTITALSMSAISTNGVIKGGGTYYMISRSLGPEFGGSIG-LIFSLANAVACAM 285

Query: 284 HIYKDDEHTIQYL 322
           ++    E  I  L
Sbjct: 286 YVVGFCESMIDLL 298


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 242 ALVAQACHASSAVMHIYKDDEHTIQY 319
           A+ A++C+  +   H+ +D +   QY
Sbjct: 302 AMRAESCYQLARAFHVQRDYDQAFQY 327


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 350 VLEVPNEESLRKVAEKLKENSILHKLWIEQPENI 451
           V+ + N+E+ RK+A +      + +LW    E +
Sbjct: 49  VVGLQNDEAARKLASRSMSLRCIFELWAHSNEGL 82


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,775
Number of Sequences: 2352
Number of extensions: 10782
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)