Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e15
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46828-7|CAA86860.1| 311|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 35 0.063
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 35 0.063
U58758-15|AAB93424.1| 259|Caenorhabditis elegans Nanos related ... 34 0.11
U41105-7|AAA82402.2| 184|Caenorhabditis elegans Hypothetical pr... 34 0.11
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 31 1.0
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 29 3.1
AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin... 29 3.1
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 29 3.1
AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin... 29 3.1
AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin... 29 3.1
Z70754-3|CAA94773.1| 293|Caenorhabditis elegans Hypothetical pr... 29 4.1
U53150-12|AAA96132.1| 115|Caenorhabditis elegans Hypothetical p... 29 4.1
Z81476-5|CAB03916.1| 332|Caenorhabditis elegans Hypothetical pr... 28 7.2
>Z46828-7|CAA86860.1| 311|Caenorhabditis elegans Hypothetical
protein R03D7.7 protein.
Length = 311
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +2
Query: 530 RGRVKCPVLRGFRCPRCGATGDRAHTIKY 616
RGRV CP LR C CGATGD AHT K+
Sbjct: 275 RGRVVCPKLRSMVCGICGATGDNAHTTKH 303
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical protein
Y53C12B.3b protein.
Length = 871
Score = 34.7 bits (76), Expect = 0.063
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 1/147 (0%)
Frame = +2
Query: 197 LQAVKLDPAVLEAQITVETRKIDGTDSTQTQVSSQGSELPAEALRVDFKKIVSMHETALL 376
LQ V QI D ST+ S S P + KK + + A +
Sbjct: 611 LQPVSSRAGSPSKQILQLVESKDDQTSTENSESPSRSSTPKHRKKTP-KKDFKVDQEASI 669
Query: 377 SLTPDQYQFLLIYVEALRQKR-IGLQKHFECAFCKKNGESVSWYRTHALKDGRGRVKCPV 553
T + + ++ K + + C C+ +H ++ G + C
Sbjct: 670 EATKTEISEENPKTDDIQSKDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCEH 729
Query: 554 LRGFRCPRCGATGDRAHTIKYCPQNSD 634
++ +C C ATG++ H CP+ +
Sbjct: 730 MKKIKCGHCEATGEQGHHPLICPKKKE 756
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical protein
Y53C12B.3a protein.
Length = 867
Score = 34.7 bits (76), Expect = 0.063
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 1/147 (0%)
Frame = +2
Query: 197 LQAVKLDPAVLEAQITVETRKIDGTDSTQTQVSSQGSELPAEALRVDFKKIVSMHETALL 376
LQ V QI D ST+ S S P + KK + + A +
Sbjct: 608 LQPVSSRAGSPSKQILQLVESKDDQTSTENSESPSRSSTPKHRKKTP-KKDFKVDQEASI 666
Query: 377 SLTPDQYQFLLIYVEALRQKR-IGLQKHFECAFCKKNGESVSWYRTHALKDGRGRVKCPV 553
T + + ++ K + + C C+ +H ++ G + C
Sbjct: 667 EATKTEISEENPKTDDIQSKDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCEH 726
Query: 554 LRGFRCPRCGATGDRAHTIKYCPQNSD 634
++ +C C ATG++ H CP+ +
Sbjct: 727 MKKIKCGHCEATGEQGHHPLICPKKKE 753
>U58758-15|AAB93424.1| 259|Caenorhabditis elegans Nanos related
protein 2 protein.
Length = 259
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 449 QKHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFR-CPRCGATGDRAHTIKYCP 622
++ + C +C+ G + W TH K KC L C CGA G+ HT YCP
Sbjct: 162 RREYGCGYCRSVGY-MRW-ETHTRK------KCDKLSSLAPCKICGARGEMNHTETYCP 212
>U41105-7|AAA82402.2| 184|Caenorhabditis elegans Hypothetical
protein T02G5.11 protein.
Length = 184
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 449 QKHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFR-CPRCGATGDRAHTIKYCP 622
++ + C +C+ G + W TH K KC L C CGA G+ HT YCP
Sbjct: 87 RREYGCGYCRSVGY-MRW-ETHTRK------KCDKLSSLAPCKICGARGEMNHTETYCP 137
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 610 NGVSSVPGGPTARAAEPSKYRALHPTAPILQSMRS 506
+G+SS PGGP + P RA P+ S RS
Sbjct: 1299 SGISSAPGGPNPSSGAPGGLRAHFHVGPVPSSGRS 1333
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 452 KHFECAFCKKNGESVSWYRTHALKDGRGRV 541
+ F+CA+C K SV Y H G GRV
Sbjct: 1250 RRFQCAYCIKVFVSVGEYYEHECASGGGRV 1279
>AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin
ring protein GRIP-1 protein.
Length = 891
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/93 (23%), Positives = 38/93 (40%)
Frame = +2
Query: 101 GQTFEEILPSTSAYIKKQPEFLESGCILKKDALQAVKLDPAVLEAQITVETRKIDGTDST 280
G+ E +L STS + P F + + K+A Q +++ L Q TV + +S
Sbjct: 569 GRLKEHVLKSTSFFFLSDPRFTTTLYTIIKEASQGLRVGSTTLSRQ-TVSSALAAALESC 627
Query: 281 QTQVSSQGSELPAEALRVDFKKIVSMHETALLS 379
Q+ + E + L + S T +S
Sbjct: 628 QSTQNISDKEKKVKKLMFTLDALTSTGSTPNVS 660
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 452 KHFECAFCKKNGESVSWYRTHALKDGRGRV 541
+ F+CA+C K SV Y H G GRV
Sbjct: 1250 RRFQCAYCIKVFVSVGEYYEHECASGGGRV 1279
>AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform b protein.
Length = 963
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/93 (23%), Positives = 38/93 (40%)
Frame = +2
Query: 101 GQTFEEILPSTSAYIKKQPEFLESGCILKKDALQAVKLDPAVLEAQITVETRKIDGTDST 280
G+ E +L STS + P F + + K+A Q +++ L Q TV + +S
Sbjct: 569 GRLKEHVLKSTSFFFLSDPRFTTTLYTIIKEASQGLRVGSTTLSRQ-TVSSALAAALESC 627
Query: 281 QTQVSSQGSELPAEALRVDFKKIVSMHETALLS 379
Q+ + E + L + S T +S
Sbjct: 628 QSTQNISDKEKKVKKLMFTLDALTSTGSTPNVS 660
>AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform a protein.
Length = 891
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/93 (23%), Positives = 38/93 (40%)
Frame = +2
Query: 101 GQTFEEILPSTSAYIKKQPEFLESGCILKKDALQAVKLDPAVLEAQITVETRKIDGTDST 280
G+ E +L STS + P F + + K+A Q +++ L Q TV + +S
Sbjct: 569 GRLKEHVLKSTSFFFLSDPRFTTTLYTIIKEASQGLRVGSTTLSRQ-TVSSALAAALESC 627
Query: 281 QTQVSSQGSELPAEALRVDFKKIVSMHETALLS 379
Q+ + E + L + S T +S
Sbjct: 628 QSTQNISDKEKKVKKLMFTLDALTSTGSTPNVS 660
>Z70754-3|CAA94773.1| 293|Caenorhabditis elegans Hypothetical
protein F58E6.3 protein.
Length = 293
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 518 LKDGRGRVKCPVLRGFRCPRCGAT 589
LK GRG KC GF RC AT
Sbjct: 269 LKTGRGETKCLCASGFAGKRCQAT 292
>U53150-12|AAA96132.1| 115|Caenorhabditis elegans Hypothetical
protein F20A1.10 protein.
Length = 115
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 95 SVGQTFEEILPSTSAYIKKQPE 160
++ + FEEI T AYIK QPE
Sbjct: 68 AIKKVFEEIKTDTDAYIKTQPE 89
>Z81476-5|CAB03916.1| 332|Caenorhabditis elegans Hypothetical
protein C25F9.8 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 452 KHFECAFCKKNGESVSWYRTHALKDGRGRVKC 547
+ FE C KNG + WY + +G+ V+C
Sbjct: 223 RRFEDLLCVKNGTTFDWYFGNLKLEGQITVEC 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,337
Number of Sequences: 27780
Number of extensions: 391243
Number of successful extensions: 1161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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