Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e06
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    73   2e-13
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    72   3e-13
At3g02090.2 68416.m00175 mitochondrial processing peptidase beta...    49   3e-06
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta...    49   3e-06
At3g29080.1 68416.m03641 hypothetical protein                          30   1.5  
At5g24360.1 68418.m02872 protein kinase family protein / Ire1 ho...    28   5.9  
At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At5g56730.1 68418.m07080 peptidase M16 family protein / insulina...    27   7.8  

>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 39/129 (30%), Positives = 68/129 (52%)
 Frame = +1

Query: 160 RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISS 339
           ++Q + LPN   +A+    +P   + +    GS YE     G +H+L   A  +T N + 
Sbjct: 77  KLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTH 136

Query: 340 FLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAP 519
           F + R++  IG   SAS  RE + YT++A +  + + +E+L + V N  F  WE+N+   
Sbjct: 137 FRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELR 196

Query: 520 RLKYDIISL 546
           ++K +I  L
Sbjct: 197 KMKVEIAEL 205


>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 38/126 (30%), Positives = 68/126 (53%)
 Frame = +1

Query: 160 RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISS 339
           +++++ LPN   +A   + +P   + +    GS YE     G +H+L   A  +T N S 
Sbjct: 73  KLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSH 132

Query: 340 FLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAP 519
           F + R++  IG   SAS  RE + YT++A +  + + +E+L + V N  F  WE+N+   
Sbjct: 133 FRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELR 192

Query: 520 RLKYDI 537
           ++K +I
Sbjct: 193 KVKVEI 198


>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 535

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
 Frame = +1

Query: 172 SVLPNKTFVAALDNGSPVTR-VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLI 348
           + LPN   VA   N S  T  V +   AGSR+E     G +H L       T   +   +
Sbjct: 100 TTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRAL 159

Query: 349 QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELN 507
           + ++  IG +++A   RE   Y  +     +N AL++L +++ N +F    +N
Sbjct: 160 EEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRIN 212


>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 531

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
 Frame = +1

Query: 172 SVLPNKTFVAALDNGSPVTR-VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLI 348
           + LPN   VA   N S  T  V +   AGSR+E     G +H L       T   +   +
Sbjct: 100 TTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRAL 159

Query: 349 QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELN 507
           + ++  IG +++A   RE   Y  +     +N AL++L +++ N +F    +N
Sbjct: 160 EEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRIN 212


>At3g29080.1 68416.m03641 hypothetical protein
          Length = 445

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = -3

Query: 578 WSKSTARIWGGREIISYFRRGALSLSSHGLNSWFETKLFRISSASFNLSCVASKV 414
           W +   R WGG E++    RG + + + G+   +E K  ++     N      ++
Sbjct: 38  WERDLFRDWGGAEVVETGMRGMMGVKA-GVTEGWEDKQAKVLEVGVNAEVAGDRI 91


>At5g24360.1 68418.m02872 protein kinase family protein / Ire1
           homolog-1 (IRE1-1) identical to Ire1 homolog-1
           [Arabidopsis thaliana] GI:15277137; cDNA Ire1 homolog-1
           GI:15277136;
          Length = 881

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 280 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDAL 453
           + +  +++S   +  K I + +   K S I  +     D  FIY +LE     LND +
Sbjct: 484 VAVKRLVQSHHDVAQKEILNLMASDKHSNIVRWYGVDQDEHFIYISLELCACSLNDLI 541


>At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 633

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 408 DEFSVSRSTNICSNLREFALNKE 340
           DE++VS   +ICS+LRE +  K+
Sbjct: 234 DEYTVSMVVSICSDLRELSKGKQ 256


>At5g56730.1 68418.m07080 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain
          Length = 956

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 211 NGSPVTRVTIAF--KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGA 375
           N  P  R  +A   K GS  E + + G++H++   A   T   ++  I + L  IGA
Sbjct: 56  NSKPRMRAALALAVKVGSVLEEEDQRGVAHIVEHLAFSATTRYTNHDIVKFLESIGA 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,203
Number of Sequences: 28952
Number of extensions: 278068
Number of successful extensions: 678
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)