BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmnc10d20 (734 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73 SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06) 29 3.0 >SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1926 Score = 31.5 bits (68), Expect = 0.73 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Frame = -3 Query: 369 LKLHKSQTCFN-KNRTHERHAQKRGKGAARDRFYSFSAGSRS-GVARIR*QYRFKEILTN 196 L+ +S+T + ++R+ +R +RGK +R R S+S+ SRS +R R + R + + Sbjct: 635 LRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRSRRRS 694 Query: 195 KICS*SICSLFRRCHPTSVRGR 130 + S S SL R + RGR Sbjct: 695 RSSSHSSSSLSRSRSRSRSRGR 716 >SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06) Length = 631 Score = 29.5 bits (63), Expect = 3.0 Identities = 14/54 (25%), Positives = 30/54 (55%) Frame = -1 Query: 365 NYTSPKHVLTRTAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNNIDSKKY 204 ++T+P++V++ + + ++ + GIV+++ L G L FGN KK+ Sbjct: 32 SFTNPEYVISEGSRASLDIRRTGETN-GIVYVLCKLVNGTTLDDFGNKEVIKKF 84 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,542,558 Number of Sequences: 59808 Number of extensions: 420802 Number of successful extensions: 1027 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1026 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1974037988 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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