Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0152
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66820.1 68418.m08425 expressed protein                             31   0.85 
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    29   3.4  
At5g22140.2 68418.m02577 pyridine nucleotide-disulphide oxidored...    28   6.0  
At5g22140.1 68418.m02578 pyridine nucleotide-disulphide oxidored...    28   6.0  
At5g19810.1 68418.m02354 proline-rich extensin-like family prote...    28   6.0  

>At5g66820.1 68418.m08425 expressed protein 
          Length = 519

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
 Frame = +2

Query: 284 KRSVFESSPEVDRFPAPYMATKLEERRKSKKFLGSLE--SASAAKMTMHTVPRTVRNSDD 457
           K S    SPE+D          L+   +  K   S++  ++S  +     V  TV+ + D
Sbjct: 294 KPSTITISPEMDSLLRSISKESLQVFDEVPKNSSSVKPVASSHEEEASEAVNLTVKTAKD 353

Query: 458 EEQRR--PFIAAHFHGNTSHLNTEVHEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRP 631
           +++RR         +G T    T+V   Y GN   R S  +P      +   +  PP +P
Sbjct: 354 KKRRRNKKKKKGGINGLTPEC-TDVSSSYSGNSTPR-SPISPEPPTTQAATKLVKPPTKP 411

Query: 632 TLTHSGHVP 658
            L+HS   P
Sbjct: 412 VLSHSATFP 420


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 566 HGAPHDVWYPSQWTISSPPPRPTLTHSGHVPRAP 667
           + +PH    PS  + SS PP P  + +G +  AP
Sbjct: 321 YSSPHSAPAPSSTSFSSAPPPPPYSSNGRINIAP 354


>At5g22140.2 68418.m02577 pyridine nucleotide-disulphide
           oxidoreductase family protein contains Pfam profile
           PF00070 Pyridine nucleotide-disulphide oxidoreductase
           domain
          Length = 311

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 506 SHLNTEVHEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTHSG 649
           SH  +E +E  K +G + +  G P  V   ++  +  P  + TL H G
Sbjct: 68  SHYQSE-YEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKG 114


>At5g22140.1 68418.m02578 pyridine nucleotide-disulphide
           oxidoreductase family protein contains Pfam profile
           PF00070 Pyridine nucleotide-disulphide oxidoreductase
           domain
          Length = 365

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 506 SHLNTEVHEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTHSG 649
           SH  +E +E  K +G + +  G P  V   ++  +  P  + TL H G
Sbjct: 122 SHYQSE-YEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKG 168


>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 249

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 554 IRVSHGAPHDVWYPSQWTISSPPPRPTLTHSGHVPR 661
           + +S   P  ++ P   T++ PPP PT+T S   PR
Sbjct: 148 VLLSPPPPPVLFSPPPPTVTRPPPPPTITRSPPPPR 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,394,496
Number of Sequences: 28952
Number of extensions: 305141
Number of successful extensions: 1076
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)