Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0152
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       37   0.014
SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)                   28   6.5  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.5  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   28   6.5  

>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 157 MAEDFDVEAMLEAPYNKSVS 216
           MAEDFD+EAMLEAPY K  +
Sbjct: 1   MAEDFDIEAMLEAPYKKETT 20


>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
          Length = 413

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 625 KKTANCFLTILMFLVVLYYLK 563
           KK   CFLT+L+F+   +YL+
Sbjct: 243 KKVMKCFLTLLLFVTQSFYLR 263


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 534 KNIYENN*LVCCKNYTTICFL 472
           KN YE   L+C KN+T  C+L
Sbjct: 406 KNTYEFECLICGKNFTNDCYL 426


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 495 NYTTICFLSVFYNYLIVITLICE*FYLTFIT 403
           NYTTI  +++  NY  ++T+     Y T +T
Sbjct: 431 NYTTIVTITITTNYTTIVTITISTNYTTIVT 461



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 495 NYTTICFLSVFYNYLIVITLICE*FYLTFIT 403
           NYTTI  +++  NY  ++T+     Y T +T
Sbjct: 443 NYTTIVTITISTNYTTIVTITITTNYTTIVT 473


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,624,226
Number of Sequences: 59808
Number of extensions: 297190
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)