BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120042.Seq (745 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 2.1 SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 26 6.5 SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 8.6 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 27.5 bits (58), Expect = 2.1 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +2 Query: 509 DEYILIADRMYVDLIYSEFRAIILPQSAYIIK 604 DEY+ A+ VD++Y + I+ S YI+K Sbjct: 2909 DEYLYHAEIQNVDILYISTKHFIITGSNYIVK 2940 >SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 493 Score = 25.8 bits (54), Expect = 6.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -3 Query: 146 LKGVNFTEAQRSNLIGFLVEHI*NNVVI 63 ++G+N + NL+ F VEH+ N+V I Sbjct: 248 IQGLNCEKGSIGNLLCFAVEHVNNHVEI 275 >SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1310 Score = 25.4 bits (53), Expect = 8.6 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Frame = +3 Query: 258 LHMTVLNSVFLNEHAKLYYRHLLRNDQ------AEARKTILNADDVYE 383 LH TVL + L A+ YY+ L N + AE KT++ D E Sbjct: 454 LHKTVLEMLDLQRQAEHYYKRKLDNAKAINALWAENLKTVVEEQDQIE 501 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,727,889 Number of Sequences: 5004 Number of extensions: 53262 Number of successful extensions: 141 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 141 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 353266144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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