BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120042.Seq (745 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 29 2.9 01_01_0034 - 269356-270333,270809-270897,273621-273957 29 5.2 05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 23 7.6 02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 28 9.0 >06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 Length = 1217 Score = 29.5 bits (63), Expect = 2.9 Identities = 21/59 (35%), Positives = 30/59 (50%) Frame = -3 Query: 413 FRTNWFN*HALVHVVGVENCFSRLGLIVAQQVPIIQFCVLV*KHAV*HGHVQHSFSLSG 237 F TNW AL V+ +ENC + L Q+P+++ VL HAV G + F +G Sbjct: 788 FETNWMK--ALTSVI-LENCMGWVQLPPLGQLPLLEDLVLRNMHAV--GQIGEEFYGNG 841 >01_01_0034 - 269356-270333,270809-270897,273621-273957 Length = 467 Score = 28.7 bits (61), Expect = 5.2 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -1 Query: 280 LFNTVMCNIRFRYRDLNNCYVDALLCNSLV 191 + N ++CN+RF +D++N V L C +V Sbjct: 124 IINVILCNVRFERQDMDNT-VTQLGCGGMV 152 >05_05_0038 - 21769936-21770199,21770785-21771198,21771274-21771434, 21771544-21771607,21771682-21771864,21772355-21772520, 21773397-21773528,21775085-21775599 Length = 632 Score = 23.4 bits (48), Expect(2) = 7.6 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +2 Query: 623 DSESGQSVDVCNELQYPWNL-ITANSFNVSTDESRQS 730 DSES + V +ELQ NL + N +V D+ + + Sbjct: 488 DSESRDDIIVADELQVDDNLAVMQNESSVREDDKKST 524 Score = 23.0 bits (47), Expect(2) = 7.6 Identities = 6/27 (22%), Positives = 16/27 (59%) Frame = +2 Query: 485 QVHWQTGRDEYILIADRMYVDLIYSEF 565 ++HWQ GR+ + + + ++Y ++ Sbjct: 427 KLHWQNGRNRSVQTGETANILVVYEDW 453 >02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691, 2076798-2076837,2076930-2077006,2077095-2077311, 2077482-2078132 Length = 467 Score = 27.9 bits (59), Expect = 9.0 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 448 LCSPASSTLLKCSVRIGLINTHSYTSSAL 362 LC +ST L C+++ I T S +SS+L Sbjct: 41 LCGSTNSTSLSCAIQSSNIKTESISSSSL 69 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,082,670 Number of Sequences: 37544 Number of extensions: 327258 Number of successful extensions: 824 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 824 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1968901276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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