BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120042.Seq (745 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g06120.1 68418.m00680 Ran-binding protein, putative similar t... 27 9.9 At3g63100.1 68416.m07087 glycine-rich protein 27 9.9 >At5g06120.1 68418.m00680 Ran-binding protein, putative similar to SP|Q9UIA9 Ran-binding protein 16 {Homo sapiens}; contains Pfam profile PF03810: Importin-beta N-terminal domain Length = 1066 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -1 Query: 442 SPASSTLLKCSVRIGLINTHSYTSSALRIVFLA 344 SP S L+C VR+ + +T+ A R FLA Sbjct: 267 SPLSKEALECLVRLASVRRSLFTNDATRSNFLA 299 >At3g63100.1 68416.m07087 glycine-rich protein Length = 199 Score = 27.5 bits (58), Expect = 9.9 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Frame = +2 Query: 425 RRRGWRTQHGRFKDHHR-YGHQVH 493 RR G +HGR + HHR +GH H Sbjct: 107 RRHGRDHRHGRDRGHHRGHGHHHH 130 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,988,420 Number of Sequences: 28952 Number of extensions: 270208 Number of successful extensions: 590 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 572 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 590 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1643603136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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