BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120026.Seq (729 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 31 1.3 SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) 30 1.7 SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 30 1.7 SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 3.9 SB_31237| Best HMM Match : Cathelicidins (HMM E-Value=0.58) 29 3.9 SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) 29 5.1 >SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) Length = 139 Score = 30.7 bits (66), Expect = 1.3 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +3 Query: 309 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 410 +PV +++ + K NN KY L WY+K++ Sbjct: 7 LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40 >SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) Length = 782 Score = 30.3 bits (65), Expect = 1.7 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 17 DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 193 D+ S RK C + +++ I+++ Q+ R +K+ K+ + TC +LR CA Sbjct: 63 DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 122 Query: 194 MKS 202 ++S Sbjct: 123 VRS 125 >SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) Length = 984 Score = 30.3 bits (65), Expect = 1.7 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 17 DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 193 D+ S RK C + +++ I+++ Q+ R +K+ K+ + TC +LR CA Sbjct: 830 DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 889 Query: 194 MKS 202 ++S Sbjct: 890 VRS 892 >SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 131 Score = 29.5 bits (63), Expect = 2.9 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = +3 Query: 273 LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKY---ILFNSWYTKIKQPEWPSSPAMW 443 +E K + Y V +DE K+ RK+ + +Y ILFN++ ++ +W S + W Sbjct: 26 IEAKTMKYKYGCSDVPRDE-KLDLRKRSLYYLERYFYFILFNTYLNMERRSKWDRSFSQW 84 >SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0) Length = 368 Score = 29.1 bits (62), Expect = 3.9 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = -2 Query: 395 PTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFFQEIYNSNSWSM 243 P N+ +++ +L A + + HDR + E N+LF I + W + Sbjct: 313 PREVHNILLLMGYLNSALNPYMYSFHDRQFKEAFKNILF--NIQSHKVWDL 361 >SB_31237| Best HMM Match : Cathelicidins (HMM E-Value=0.58) Length = 562 Score = 29.1 bits (62), Expect = 3.9 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 249 PAIAIVNFLEKKNINYILNVMPVMQDERK 335 P ++ + EK N N ILN +P+ Q+++K Sbjct: 239 PQASVRSTYEKDNSNTILNTLPIKQEQKK 267 >SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) Length = 710 Score = 28.7 bits (61), Expect = 5.1 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -1 Query: 222 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 139 RF Q I+AH SF +R+LLR + H Sbjct: 22 RFPRNPQKLIYAHQNSFKKRILLRRIEH 49 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,197,444 Number of Sequences: 59808 Number of extensions: 508887 Number of successful extensions: 1357 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1243 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1356 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1949964354 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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