BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120026.Seq (729 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 4.2 AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subu... 31 4.2 AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 4.2 AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 31 4.2 BC016048-1|AAH16048.1| 317|Homo sapiens LRRC38 protein protein. 30 7.4 AL603749-2|CAH70436.1| 294|Homo sapiens leucine rich repeat con... 30 7.4 AL354712-1|CAI21926.1| 294|Homo sapiens leucine rich repeat con... 30 7.4 >BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA directed) polypeptide A, 155kDa protein. Length = 1390 Score = 31.1 bits (67), Expect = 4.2 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%) Frame = +2 Query: 11 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 133 I+DKC K+ +C H + G+ KI H++Y K+VV + N Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192 >AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subunit RPC155-A protein. Length = 374 Score = 31.1 bits (67), Expect = 4.2 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%) Frame = +2 Query: 11 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 133 I+DKC K+ +C H + G+ KI H++Y K+VV + N Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192 >AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA directed) (155kD) (RPC155) protein. Length = 1390 Score = 31.1 bits (67), Expect = 4.2 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%) Frame = +2 Query: 11 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 133 I+DKC K+ +C H + G+ KI H++Y K+VV + N Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192 >AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest subunit protein. Length = 1391 Score = 31.1 bits (67), Expect = 4.2 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%) Frame = +2 Query: 11 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 133 I+DKC K+ +C H + G+ KI H++Y K+VV + N Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192 >BC016048-1|AAH16048.1| 317|Homo sapiens LRRC38 protein protein. Length = 317 Score = 30.3 bits (65), Expect = 7.4 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = -1 Query: 651 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 559 SL +S+ SF+ +F+L T +C+ + +G+A Sbjct: 250 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 280 >AL603749-2|CAH70436.1| 294|Homo sapiens leucine rich repeat containing 38 protein. Length = 294 Score = 30.3 bits (65), Expect = 7.4 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = -1 Query: 651 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 559 SL +S+ SF+ +F+L T +C+ + +G+A Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257 >AL354712-1|CAI21926.1| 294|Homo sapiens leucine rich repeat containing 38 protein. Length = 294 Score = 30.3 bits (65), Expect = 7.4 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = -1 Query: 651 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 559 SL +S+ SF+ +F+L T +C+ + +G+A Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 105,723,342 Number of Sequences: 237096 Number of extensions: 2284464 Number of successful extensions: 4648 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4471 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4648 length of database: 76,859,062 effective HSP length: 88 effective length of database: 55,994,614 effective search space used: 8623170556 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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