BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120026.Seq (729 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g36920.1 68418.m04425 expressed protein predicted protein, Ar... 30 1.8 At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 29 2.4 At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PS... 29 4.2 At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p... 28 5.5 At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p... 28 5.5 At2g04080.1 68415.m00391 MATE efflux family protein similar to h... 28 7.3 At5g28320.1 68418.m03438 expressed protein This is likely a pseu... 27 9.6 At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p... 27 9.6 >At5g36920.1 68418.m04425 expressed protein predicted protein, Arabidopsis thaliana; expression supported by MPSS Length = 82 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -1 Query: 621 NSAKFALVSTAVCLFLLAGIAALSLEDDDVDRSAIFLPSFQC 496 N++ L+S +CL + G+ S+ DDD+ + PS C Sbjct: 5 NTSHVLLLSLLLCLMFVIGLVEASIPDDDMGPAIYTPPSGSC 46 >At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) identical to like heterochromatin protein LHP1 [Arabidopsis thaliana] GI:15625407; contains Pfam profile PF00385: 'chromo' (CHRromatin Organization MOdifier) Length = 445 Score = 29.5 bits (63), Expect = 2.4 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = +3 Query: 405 IKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKMVKKWPTDRHRRLQATTQQFQRAKKD 584 IK WP + W+ ++N +AD + D E +K R R+ + Q KK Sbjct: 127 IKWRGWPETANTWEPLENLQSIAD---VIDAFEGSLKPGKPGRKRKRKYAGPHSQMKKKQ 183 Query: 585 RL 590 RL Sbjct: 184 RL 185 >At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PSP) family protein similar to SP|Q13435 Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) {Homo sapiens}; contains Pfam profiles PF04046: PSP, PF04037: Domain of unknown function (DUF382) Length = 584 Score = 28.7 bits (61), Expect = 4.2 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Frame = +3 Query: 276 EKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSW-YTKIKQPEW-PSSPAMWDL 449 EK+++ +N D+ + ++ K+K I+N K L ++KQ P +WD Sbjct: 124 EKEDVKKKVNSDSDSDDDEQDNQNKEKGISNKKKKLQRRMKIAELKQVSARPDVVEVWDA 183 Query: 450 VKNTPELADFVFIFDHTEKMVKKWPTDR 533 P+L F+ + +T + + W R Sbjct: 184 TSADPKLLVFLKSYRNTVPVPRHWSQKR 211 >At4g36010.1 68417.m05127 pathogenesis-related thaumatin family protein similar to receptor serine/threonine kinase PR5K [Arabidopsis thaliana] GI:1235680; contains Pfam profile PF00314: Thaumatin family Length = 301 Score = 28.3 bits (60), Expect = 5.5 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -2 Query: 167 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 39 E CCSG F D CKP + + CP A+ + D+ T Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234 >At2g17860.1 68415.m02069 pathogenesis-related thaumatin family protein similar to receptor serine/threonine kinase PR5K [Arabidopsis thaliana] GI:1235680; contains Pfam profile PF00314: Thaumatin family Length = 253 Score = 28.3 bits (60), Expect = 5.5 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -2 Query: 167 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 39 E CC+G F D C+P + +FF CPTA+ + D+ T Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233 >At2g04080.1 68415.m00391 MATE efflux family protein similar to hypothetical protein GB:AAC27412; contains Pfam profile PF01554: Uncharacterized membrane protein family Length = 476 Score = 27.9 bits (59), Expect = 7.3 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +1 Query: 364 TTINTFCLTVGTLRSSSPSGLVA 432 T++ + CLT+GTL PSG+ A Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309 >At5g28320.1 68418.m03438 expressed protein This is likely a pseudogene. Length = 967 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +3 Query: 417 EWPSSPAMWDLV--KNTPELADFVFIFDHTEKMVKKW 521 EW + D+V ELAD V ++D EK++ +W Sbjct: 601 EWMKDEKLRDIVFCVRDNELADGVSVYDPLEKIIPRW 637 >At2g24810.1 68415.m02968 pathogenesis-related thaumatin family protein similar to thaumatin-like protein [Arabidopsis thaliana] GI:2435406; contains Pfam profile PF00314: Thaumatin family Length = 193 Score = 27.5 bits (58), Expect = 9.6 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -2 Query: 167 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCD 48 E CC+G F+ + C P K CPTA+ +V D Sbjct: 139 EYCCTGAFSKPETCPPTKYSKIFKGA----CPTAYSYVYD 174 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,992,071 Number of Sequences: 28952 Number of extensions: 344110 Number of successful extensions: 910 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 890 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 910 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1594686376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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