Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120019.Seq
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 38 0.012
06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575... 31 1.1
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014... 31 1.4
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890... 29 4.3
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783... 29 5.7
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 28 7.6
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643... 28 10.0
02_01_0498 - 3614621-3614674,3614780-3617161 28 10.0
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946... 28 10.0
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 37.5 bits (83), Expect = 0.012
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 285 VCEYCEAEIKNWSEDECIEY-AHVTLSPYCAYANKIAEHESFGDNITINAVLVKEGRPKC 461
V E E +K W E E A LS C I E FGD + AV+ +G C
Sbjct: 617 VKESVEVAVKAWGEKSLTELEAEERLSYSCEKGRSILIVE-FGDILPKVAVIANKGLTNC 675
Query: 462 VYRCMSNLQSRMDTFVIFG 518
+ C+S + +D +I G
Sbjct: 676 IIGCLSTQEQWLDACIIVG 694
>06_01_0770 -
5756200-5756741,5756790-5757286,5757356-5757782,
5757854-5757911
Length = 507
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 103 DTPPFYFINTRDNFRDNIAEHVFDMLLERHG 195
D P F+NT D+F I +H+ + + E+HG
Sbjct: 318 DQCPASFLNTSDDFTARIVDHMVEHIKEQHG 348
>04_03_0632 +
18200844-18200970,18201134-18201190,18201370-18201460,
18201545-18201705,18202176-18202303,18202386-18202523,
18202966-18203058,18203546-18203704
Length = 317
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 341 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 255
FNT V P++Y FTIL +I ++I++K
Sbjct: 239 FNTAVVSPVYYVMFTIL--TIIANMIMYK 265
>04_04_0969 -
29787617-29787919,29788019-29788180,29788962-29789093,
29789708-29789760,29790518-29791007
Length = 379
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 457 LGLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSS 326
LG + T ++ + PN+ ++ ++A++Q G + TC S + +
Sbjct: 163 LGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGA 206
>10_06_0099 -
10677024-10677073,10677894-10677998,10678254-10678315,
10678694-10679197,10679695-10680356,10680695-10680793,
10680881-10681110,10681227-10681278,10681391-10681577,
10681661-10681873,10682006-10682175,10683455-10683730,
10684188-10684643,10685527-10685766,10687517-10687771
Length = 1186
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 287 HNVIVDLIVFKPLTIKLLINAVFTMG*FSNEPCLSSNMSNTCSAMLSRKLSR 132
H +I L + + L++ +F G +NE C + T S +SRK S+
Sbjct: 190 HGMIFSLSASLGIVVILVVITIFKRGKQANELCQHEKLLQTPSVKISRKWSK 241
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 341 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 255
FNT V PI+Y FT L ++ +I+FK
Sbjct: 233 FNTAVVSPIYYVMFTSL--TILASVIMFK 259
>05_04_0366 -
20663243-20663388,20663467-20663572,20664275-20664367,
20664520-20664657,20664759-20664886,20664996-20665156,
20665277-20665367,20665460-20665516,20666288-20666444
Length = 358
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 341 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 255
FNT V PI+Y FT L ++ +I+FK
Sbjct: 249 FNTAVVSPIYYTMFTSL--TILASVIMFK 275
>02_01_0498 - 3614621-3614674,3614780-3617161
Length = 811
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 475 MHLYTHLGLPSFTSTALMVMLSPND-SCSAILLAYAQYGD 359
+ LY+ GLP A + SPND S +A L A + GD
Sbjct: 50 VELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGD 89
>01_06_1567 +
38293612-38293795,38294467-38294523,38294609-38294699,
38294799-38294959,38295045-38295172,38295291-38295428,
38295717-38295809,38298219-38298324,38298393-38298517
Length = 360
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 341 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 255
FNT V PI+Y FT L ++ +I+FK
Sbjct: 258 FNTAVVSPIYYTMFTSL--TILASVIMFK 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,853,109
Number of Sequences: 37544
Number of extensions: 413289
Number of successful extensions: 1117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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