BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120006.Seq (617 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 128 3e-30 01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 128 3e-30 05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 111 4e-25 02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 111 6e-25 02_02_0196 + 7685933-7685961,7686086-7686284 64 8e-11 01_01_0582 - 4317216-4317731 28 5.2 >06_03_0409 - 20503480-20503678,20504522-20504717,20504805-20504847, 20505632-20505739,20505848-20505850 Length = 182 Score = 128 bits (309), Expect = 3e-30 Identities = 60/83 (72%), Positives = 67/83 (80%) Frame = +1 Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 438 KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERA 136 Query: 439 GFNVAHRRRKTGKVGFPHRLTKE 507 G+ VA RRR +VG HR+TKE Sbjct: 137 GYRVARRRRCKSRVGIQHRVTKE 159 Score = 111 bits (267), Expect = 4e-25 Identities = 56/80 (70%), Positives = 63/80 (78%) Frame = +2 Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217 SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62 Query: 218 RNEKIAVHCTVRELKQKKSL 277 RNEKIA + TVR K + L Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 Query: 480 GISPPPHKGSAMKWFQQKYDG 542 GI K AMKWFQ KY+G Sbjct: 151 GIQHRVTKEDAMKWFQVKYEG 171 >01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854, 5769945-5770140,5770836-5771034 Length = 182 Score = 128 bits (309), Expect = 3e-30 Identities = 60/83 (72%), Positives = 67/83 (80%) Frame = +1 Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 438 KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERA 136 Query: 439 GFNVAHRRRKTGKVGFPHRLTKE 507 G+ VA RRR +VG HR+TKE Sbjct: 137 GYRVARRRRCKSRVGIQHRVTKE 159 Score = 111 bits (266), Expect = 6e-25 Identities = 56/80 (70%), Positives = 63/80 (78%) Frame = +2 Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217 SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR Sbjct: 3 SEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62 Query: 218 RNEKIAVHCTVRELKQKKSL 277 RNEKIA + TVR K + L Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 Query: 480 GISPPPHKGSAMKWFQQKYDG 542 GI K AMKWFQ KY+G Sbjct: 151 GIQHRVTKEDAMKWFQVKYEG 171 >05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195, 6565303-6565409,6566310-6566395,6566396-6566594 Length = 181 Score = 111 bits (267), Expect = 4e-25 Identities = 56/80 (70%), Positives = 63/80 (78%) Frame = +2 Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217 SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62 Query: 218 RNEKIAVHCTVRELKQKKSL 277 RNEKIA + TVR K + L Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82 Score = 64.9 bits (151), Expect = 5e-11 Identities = 28/43 (65%), Positives = 33/43 (76%) Frame = +1 Query: 379 KYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 507 +YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKE Sbjct: 116 RYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKE 158 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 Query: 480 GISPPPHKGSAMKWFQQKYDG 542 GI K AMKWFQ KY+G Sbjct: 150 GIQHRVTKEDAMKWFQVKYEG 170 >02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349, 7676449-7676648 Length = 143 Score = 111 bits (266), Expect = 6e-25 Identities = 56/80 (70%), Positives = 63/80 (78%) Frame = +2 Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217 SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR Sbjct: 29 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 88 Query: 218 RNEKIAVHCTVRELKQKKSL 277 RNEKIA + TVR K + L Sbjct: 89 RNEKIACYVTVRGEKAMQLL 108 Score = 68.1 bits (159), Expect = 5e-12 Identities = 32/41 (78%), Positives = 35/41 (85%) Frame = +1 Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 381 KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK Sbjct: 103 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143 >02_02_0196 + 7685933-7685961,7686086-7686284 Length = 75 Score = 64.1 bits (149), Expect = 8e-11 Identities = 28/42 (66%), Positives = 32/42 (76%) Frame = +1 Query: 382 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 507 YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKE Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKE 52 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 Query: 480 GISPPPHKGSAMKWFQQKYDG 542 GI K AMKWFQ KY+G Sbjct: 44 GIQHRVTKEDAMKWFQVKYEG 64 >01_01_0582 - 4317216-4317731 Length = 171 Score = 28.3 bits (60), Expect = 5.2 Identities = 17/42 (40%), Positives = 20/42 (47%) Frame = -3 Query: 219 RRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMF 94 RRI ++ + L TGC P S S AARV S Q F Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,599,397 Number of Sequences: 37544 Number of extensions: 334468 Number of successful extensions: 917 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 917 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1490248872 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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