BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120003.Seq (731 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF022985-2|AAB69972.2| 195|Caenorhabditis elegans Hypothetical ... 32 0.36 AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical ... 29 3.4 AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical ... 29 3.4 Z81513-12|CAE17799.1| 417|Caenorhabditis elegans Hypothetical p... 28 7.8 Z29094-16|CAA82345.2| 184|Caenorhabditis elegans Hypothetical p... 28 7.8 >AF022985-2|AAB69972.2| 195|Caenorhabditis elegans Hypothetical protein T15B7.17 protein. Length = 195 Score = 32.3 bits (70), Expect = 0.36 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = -1 Query: 650 DKVTCAYSIHSSSDQFFISASQYXXXXXXXX*LYLNPLTIKLLINAVLQWDNFQTS 483 D++T + S SD F+I AS+ Y N L +++ +N L+ N+QTS Sbjct: 44 DEMTSGHG-RSFSDFFYIPASEIDYYASLMRIFYANKLFLEIAVNKFLKSVNYQTS 98 >AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical protein Y45G12C.11 protein. Length = 779 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -1 Query: 620 SSSDQFFISASQYXXXXXXXX*LYLNPLTIKLLINAVLQWDNFQTS 483 S SD F+I S+ Y N L +++ +N L+ NFQTS Sbjct: 661 SVSDFFYIPTSESEYYASLMRIFYENNLFLEIAVNKFLKSVNFQTS 706 >AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical protein F56A4.6 protein. Length = 796 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -1 Query: 620 SSSDQFFISASQYXXXXXXXX*LYLNPLTIKLLINAVLQWDNFQTS 483 S SD F+I S+ Y N L +++ +N L+ NFQTS Sbjct: 678 SVSDFFYIPTSESEYYASLMRIFYENNLFLEIAVNKFLKSVNFQTS 723 >Z81513-12|CAE17799.1| 417|Caenorhabditis elegans Hypothetical protein F26D2.16 protein. Length = 417 Score = 27.9 bits (59), Expect = 7.8 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Frame = +2 Query: 50 DLLKNISFSHSKCAPFKLQNYTVLKRLSNGFIDKSV--DVGSISELQKFNFKINRLTSYI 223 D L + FS+ C + V++ + N + K+V DV SIS+ F R+T + Sbjct: 318 DRLLSYKFSYKGCGRM-VSKEEVIEHIINLPLRKNVELDVKSISDSPSFYLIRMRITGLL 376 Query: 224 SNIFEYEFVV 253 S FE F V Sbjct: 377 SKPFEISFKV 386 >Z29094-16|CAA82345.2| 184|Caenorhabditis elegans Hypothetical protein C07A9.9 protein. Length = 184 Score = 27.9 bits (59), Expect = 7.8 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Frame = +1 Query: 547 KYNQVDDHVV----CEYCEAEIKNWSEDECIEYAHVTLSPYCAY 666 +Y VDD V C +C W D+C + H +L +C Y Sbjct: 59 EYQYVDDDVPNSERCHFCMKRKGRWMGDDCSD--HSSLCKHCCY 100 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,438,598 Number of Sequences: 27780 Number of extensions: 309771 Number of successful extensions: 953 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 911 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 953 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1714401074 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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