BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120003.Seq (731 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 22 5.2 AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 6.8 AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 6.8 DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 9.0 >DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. Length = 471 Score = 22.2 bits (45), Expect = 5.2 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +2 Query: 116 VLKRLSNGFIDKSVDVGSISELQKFN 193 ++ L G I + + GSISE QKF+ Sbjct: 413 IVSGLITGLIMRVLICGSISEEQKFD 438 >AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor protein. Length = 501 Score = 21.8 bits (44), Expect = 6.8 Identities = 8/17 (47%), Positives = 11/17 (64%) Frame = -3 Query: 213 VSRFILKLNFCNSLIEP 163 +S L L +CNSL+ P Sbjct: 408 LSSLFLWLGYCNSLLNP 424 >AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. Length = 652 Score = 21.8 bits (44), Expect = 6.8 Identities = 11/37 (29%), Positives = 16/37 (43%) Frame = +1 Query: 238 VRVCSLEHNLSTVHVINAETKTKLGHINVSLNQNDPN 348 + C N ST+ NA T + N + N N+ N Sbjct: 216 LETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNN 252 >DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 391 Score = 21.4 bits (43), Expect = 9.0 Identities = 8/24 (33%), Positives = 13/24 (54%) Frame = +2 Query: 443 IAEHVFDMLLERHGSFENYPIVTR 514 +AE D +LE+ G+F + R Sbjct: 171 VAEETVDYMLEKSGNFSRLVVFFR 194 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 183,539 Number of Sequences: 438 Number of extensions: 3657 Number of successful extensions: 9 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22779405 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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