BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120003.Seq (731 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 30 1.4 At4g38730.1 68417.m05486 expressed protein 30 1.8 At4g09640.1 68417.m01584 expressed protein several hypothetical ... 29 4.2 At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 29 4.2 At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR... 28 5.6 At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 28 5.6 At3g23870.1 68416.m03000 permease-related low similarity to puri... 28 5.6 At1g34470.1 68414.m04283 permease-related low similarity to puri... 28 5.6 At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 28 7.3 At1g71900.1 68414.m08312 expressed protein 28 7.3 At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr... 27 9.7 At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 27 9.7 At1g04050.1 68414.m00392 SET domain-containing protein / suppres... 27 9.7 >At5g02350.1 68418.m00158 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 651 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/51 (23%), Positives = 25/51 (49%) Frame = +1 Query: 562 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITI 714 D++++C+ C I + C++ L CA A++ +H G +T+ Sbjct: 388 DENIICQACILPIYEGNYYSCMDQCDFVLHEACANASRKKDHALHGHPLTL 438 >At4g38730.1 68417.m05486 expressed protein Length = 326 Score = 29.9 bits (64), Expect = 1.8 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -3 Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVD 520 FN + PI+Y FT L ++ I+FK N Q D Sbjct: 237 FNAAIVSPIYYVMFTTL--TIVASAIMFKDWNGQNTD 271 >At4g09640.1 68417.m01584 expressed protein several hypothetical proteins - Arabidopsis thaliana Length = 386 Score = 28.7 bits (61), Expect = 4.2 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQA 526 FNT V PI+Y FT L ++ +I+FK + Q+ Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFKDWDRQS 283 >At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 776 Score = 28.7 bits (61), Expect = 4.2 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -3 Query: 201 ILKLNFCNSLIEPTSTDLSINPLLN 127 IL L FC SL+E S+ ++N LLN Sbjct: 655 ILNLKFCESLVELPSSIRNLNKLLN 679 >At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1145 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -3 Query: 201 ILKLNFCNSLIEPTSTDLSINPLL 130 ILKL FC SL+E S+ ++N LL Sbjct: 654 ILKLGFCKSLVELPSSIRNLNKLL 677 >At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 4706 Score = 28.3 bits (60), Expect = 5.6 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +2 Query: 5 VVSMCVDNAFA-YTTDDLLKNISFSHSKCAPFKLQNYTVLKRLSNGFI 145 V S+ +N FA D LLK +S + K P+K Q V ++ S+G I Sbjct: 1644 VFSLLDENIFAGMNKDQLLKKLSNTVVKDLPYKCQKIVVTEQDSSGCI 1691 >At3g23870.1 68416.m03000 permease-related low similarity to purine permease [Arabidopsis thaliana] GI:7620007; contains 9 predicted transmembrane domains; contains Pfam PF05653: Protein of unknown function (DUF803); identified as COG0697, Permeases of the drug/metabolite transporter (DMT) superfamily Length = 335 Score = 28.3 bits (60), Expect = 5.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544 FNT V P++Y FT +I +I+FK Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266 >At1g34470.1 68414.m04283 permease-related low similarity to purine permease [Arabidopsis thaliana] GI:7620007 Length = 368 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -3 Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544 FNT V PI+Y FT L ++ +I+FK Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277 >At5g02330.1 68418.m00156 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 656 Score = 27.9 bits (59), Expect = 7.3 Identities = 11/54 (20%), Positives = 26/54 (48%) Frame = +1 Query: 562 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAV 723 +++++C+ C I + C++ + L CA A++ +H +T+ V Sbjct: 388 NENIICQACILPIYEGNYYSCMDQCNFILHEACANASRKKDHALHSHPLTLKVV 441 >At1g71900.1 68414.m08312 expressed protein Length = 343 Score = 27.9 bits (59), Expect = 7.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544 FNT + PI+Y FT L ++ +I+FK Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277 >At5g48740.1 68418.m06032 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 895 Score = 27.5 bits (58), Expect = 9.7 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 158 DVGSISELQKFNFKINRLTSYISNI 232 +VGS+ +LQK N N+L S+ S + Sbjct: 425 NVGSLKDLQKLNLSFNQLESFGSEL 449 >At4g13800.1 68417.m02139 permease-related contains 9 predicted transmembrane domains; contains Pfam PF05653: Protein of unknown function (DUF803); identified as COG0697, Permeases of the drug/metabolite transporter (DMT) superfamily Length = 336 Score = 27.5 bits (58), Expect = 9.7 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -3 Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544 FNT V P++Y FT ++ +I+FK Sbjct: 240 FNTAVISPVYYVMFT--TFTILASMIMFK 266 >At1g04050.1 68414.m00392 SET domain-containing protein / suppressor of variegation related 1 (SUVR1) identical to suppressor of variegation related 1 [Arabidopsis thaliana] GI:15004614; contains Pfam profiles PF00856: SET domain, PF05033: Pre-SET motif; identical to cDNA trithorax 3 (ATX3) partial cds GI:15217142 Length = 630 Score = 27.5 bits (58), Expect = 9.7 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 20 VDNAFAYTTDDLLKNISFSHSKCAPFKLQNYTVLK 124 VDN FAYT D LLK F ++ + + Q VL+ Sbjct: 377 VDNGFAYTLDGLLKE-EFLEARISEARDQRKQVLR 410 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,055,403 Number of Sequences: 28952 Number of extensions: 269189 Number of successful extensions: 711 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 696 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 711 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1604469728 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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