Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060185.seq
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 28 1.4
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 26 5.6
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 26 5.6
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 5.6
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 5.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 5.6
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 7.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 7.5
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch... 25 9.9
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 25 9.9
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 250 PTLLHCGRLTKNLKLSGDSFYGKRELTPLAPGTSGAI 360
P LHC L ++ S Y ++LTP+ T+GAI
Sbjct: 152 PVKLHCSMLAEDAIKSAVKHYRSKQLTPVGT-TAGAI 187
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 408 PSNNTRNRYWALSNDEVQEIDHVPYNLRYYCYW 506
P +N N++ N + IDH+PY+ + +W
Sbjct: 369 PLSNLLNKFHRQRNGNL--IDHIPYSYQMMLFW 399
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 6 EQALAHYGFLKFINDHIYPKPPGCNL 83
E+A+ HY KFI+DH++ + G N+
Sbjct: 200 EEAVKHY---KFISDHLFEEECGSNV 222
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -1
Query: 527 SQDIHFSPVTIISQVVRDMINLLNFII 447
SQD + VT++ + +RD+ + + F++
Sbjct: 467 SQDTSLTSVTVLPRTIRDVFDRIRFVL 493
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +3
Query: 294 EWGLLLWQERIDTTCSWNF 350
EW L+LW D+ W+F
Sbjct: 199 EWSLILWDILFDSALYWDF 217
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 372 IVSKSSVPLKDIPSNNTRNRYWALSNDEVQEIDH 473
++ V ++D+ NN RNRY + + EI++
Sbjct: 159 VIEGDGVFMQDVEINNVRNRYILVRASTLSEIEN 192
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 515 EYPGSFYMRYVKKVRIIRNPDGSIKTPXG 601
++ GS + YVKK+RII + + +P G
Sbjct: 81 KFAGSTWTYYVKKIRIILGREPANPSPKG 109
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 384 SSVPLKDIPSNNTRNRYWALSNDEVQEIDHVPYNLRYYCY 503
SSV L T + YW+L + V +VPY C+
Sbjct: 86 SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVACF 125
>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 321
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Frame = +3
Query: 324 IDTTCSWNFWGNYKGSIVSKSS--VPLKDIP---SNNTRNRYWALSNDEVQEIDHV 476
+ T SWN W G +V +S + D P NT N +D + ++ V
Sbjct: 174 VGTADSWNLWAGGSGDVVITASDFIMSNDFPYWQGQNTSNMTNTFISDTLAALERV 229
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 433 YLFRVLFDGISFRGTEDLDTMDPL*LPQKFQEQVVSILSCHKR 305
+L R + + R E + +DP + QKFQ V I++ +K+
Sbjct: 511 FLVRSKLESLLTRRAEIIADIDPELVYQKFQRSVSHIINTYKQ 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,018
Number of Sequences: 5004
Number of extensions: 61426
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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