BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_FL5_D04 (863 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 368 e-103 SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 368 e-103 SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.0 SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 6.0 SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 7.9 >SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 368 bits (906), Expect = e-103 Identities = 167/273 (61%), Positives = 207/273 (75%) Frame = +3 Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212 MSH KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60 Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392 DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK Sbjct: 61 DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120 Query: 393 NWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 572 NW+ + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+ Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178 Query: 573 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXL 752 MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I +RW TK L Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238 Query: 753 PRKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851 PRKTH+GL KVACIGAWHP+ V +TV RAG G Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAG 271 >SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 368 bits (905), Expect = e-103 Identities = 166/273 (60%), Positives = 207/273 (75%) Frame = +3 Query: 33 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212 MSH KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60 Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392 DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK Sbjct: 61 DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120 Query: 393 NWYXXXXXXXXXXXXXWQDKLGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 572 NW+ + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+ Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178 Query: 573 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXL 752 MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I +RW TK L Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238 Query: 753 PRKTHKGLXKVACIGAWHPSRVSFTVXRAGQKG 851 PRKTH+GL KVACIGAWHP+ V +TV RAG G Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAG 271 >SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 482 Score = 26.2 bits (55), Expect = 6.0 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 501 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 611 C+VV + T M+ QRQ K I + LNG +++K Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467 >SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID complex subunit Taf111|Schizosaccharomyces pombe|chr 1|||Manual Length = 979 Score = 26.2 bits (55), Expect = 6.0 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +1 Query: 307 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRISLD 459 TL DYA+ S +S+ LK V+ T T RRR + RN + L+ Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269 >SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces pombe|chr 3|||Manual Length = 554 Score = 25.8 bits (54), Expect = 7.9 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = -1 Query: 209 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 45 F N VG G+I D S + +R+VF D +G L ++SH T F Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,546,801 Number of Sequences: 5004 Number of extensions: 73102 Number of successful extensions: 174 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 172 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 430470850 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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