BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F10_e78_12.seq
         (1416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 44   3e-04
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.026
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 34   0.24 
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)                  33   0.73 
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.73 
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.3  
SB_21487| Best HMM Match : MAM (HMM E-Value=0)                         29   6.8  
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.0  

>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +3

Query: 90  VMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIKMFDRTRI-- 263
           V +S LPP+ +WQ +++   E GDV F +     T +V F +  D + AI+  D ++   
Sbjct: 382 VQVSGLPPTGSWQDLKDHMREAGDVLFTDVFKDGTGVVEFARYDDMKFAIRNLDDSKFRS 441

Query: 264 -EGRTIDVR 287
            EG T  +R
Sbjct: 442 HEGETSYIR 450



 Score = 32.7 bits (71), Expect = 0.73
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = +3

Query: 69  REKTSDM-VMISNLPPSVTWQLIREKFSECG-----DVKFAETTGPDTAIVRFHKEWDAE 230
           R  ++D  V + NLP  V  + + + F + G     D+K     GP  A V F    DAE
Sbjct: 255 RSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAE 314

Query: 231 RAIKMFDRTRIEGRTIDVRY 290
            A+K  D    +G  I V +
Sbjct: 315 DAVKGRDGHEFDGYRIRVEF 334


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 37.5 bits (83), Expect = 0.026
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 51  NAQQSGREKTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRF 209
           N   +  E+    V ++NL P +T +++   FS CGD+K+    G D    R+
Sbjct: 61  NVDANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRY 113


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 34.3 bits (75), Expect = 0.24
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 75  KTSDMVMISNLPPSVTWQLIREKFSECGDVKF--AETTGPDTAIVRFHKEWDAERAIKMF 248
           +T   + I NL   V+WQ +++   + GDV +  A        ++ F  + D +RA+K  
Sbjct: 94  RTPWRMTIENLSSRVSWQDLKDFCRQVGDVTYGDAHKQRQGEGVIEFSCKRDLKRALKKL 153

Query: 249 DRTRIEGRTI 278
           D   + G+ I
Sbjct: 154 DGEELNGKRI 163


>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
          Length = 141

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +3

Query: 75  KTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIKMFDR 254
           +TS  V ISNL P+V+ Q I E F   G +K  +      A V +  + DA  A   +  
Sbjct: 13  QTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLRAGMAEVVYTTKEDAVTAYARYHN 72

Query: 255 TRIEGRTIDVR 287
             ++G+ +  +
Sbjct: 73  RNLDGQPMQCK 83


>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +3

Query: 75  KTSDMVMISNLPPSVTWQLIREKFSECGDVKFAETTGPDTAIVRFHKEWDAERAIKMFDR 254
           +TS  V ISNL P+V+ Q I E F   G +K  +      A V +  + DA  A   +  
Sbjct: 218 QTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLRAGMAEVVYTTKEDAVTAYARYHN 277

Query: 255 TRIEGRTIDVR 287
             ++G+ +  +
Sbjct: 278 RNLDGQPMQCK 288


>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query: 90  VMISNLPPSVTWQLIREKFSECGDVK----FAETTGPDTAI--VRFHKEWDAERAIKMFD 251
           + +SNLP       I E FS+ G VK         G       V + +E  A  A+   D
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232

Query: 252 RTRIEGRTIDV 284
           +T ++GRTI V
Sbjct: 233 KTEVKGRTISV 243


>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
          Length = 874

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 311 HPTISSEISHIDGSTLDPCSVEHFYC 234
           HPT++  I  +DG  + PC  E  +C
Sbjct: 187 HPTVTKNILFLDGLPVFPCDFEQGFC 212


>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 78  TSDMVMISNLPPSVTWQLIREKFSECGDVKFAE--TTGPDTAIVRFHKEWDAERAIKMFD 251
           T   +++ NL     WQ +++   + G+V F +         +  F  E D   A+K  D
Sbjct: 341 TEYRLIVENLSTRAGWQDLKDYMRQAGEVTFTQCHKDRVGEGVCDFSNESDMLYALKKLD 400

Query: 252 RTRIEGRTI 278
            T + G+ I
Sbjct: 401 GTELFGKRI 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,287,776
Number of Sequences: 59808
Number of extensions: 581418
Number of successful extensions: 1243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4530781922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)