KWMTBOMO05567

Protein

Length

117 amino acids

Protein family membership

None predicted.

Domains and repeats

Domain
1 - 112
DNA-directed RNA polymerase, RBP11-like dimerisation domain (IPR009025)

1 20 40 60 80 100 117

Detailed signature matches

IPR009025

DNA-directed RNA polymerase, RBP11-like dimerisation domain
1. SSF55257 (RBP11-lik...)
  
  1 - 112
  
  SUPERFAMILY
  SSF55257 (RBP11-like subunits of RNA polymerase)
2. PF13656 (RNA_pol_L_2)
  
  31 - 103
  
  Pfam
  PF13656 (RNA_pol_L_2)
IPR008193

DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
1. PS01154 (RNA_POL_L_...)
  
  35 - 66
  
  PROSITE patterns
  PS01154 (RNA_POL_L_13KD)

no IPR

Unintegrated signatures

Coil

91 - 111

COILS
Coil (Coil)
G3DSA:3.30.13...

1 - 113

GENE3D
G3DSA:3.30.1360.10 (G3DSA:3.30.1360.10)
cd06926 (RNAP_II_RPB11)

14 - 105

CDD
cd06926 (RNAP_II_RPB11)

Residue annotation

RPB11 - RPB3 heter...

19V

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

21K

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

35V

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

39D

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

41T

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

42L

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

44N

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

49Q

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

52K

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

91I

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

92T

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

97E

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

98L

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

99S

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

101F

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

102E

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

103E

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

104R

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)

105F

RPB11 - RPB3 heterodimer interface
19V, 21K, 35V, 39D, 41T, 42L, 44N, 49Q, 52K, 91I, 92T, 97E, 98L, 99S, 101F, 102E, 103E, 104R, 105F
CDD
cd06926 (RNAP_II_RPB11)
RPB11 - RPB1 inter...

26K

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)

47R

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)

58F

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)

60G

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)

61Y

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)

62K

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)

64P

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)

65H

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)

66P

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)

67L

RPB11 - RPB1 interaction site
26K, 47R, 58F, 60G, 61Y, 62K, 64P, 65H, 66P, 67L
CDD
cd06926 (RNAP_II_RPB11)
RPB11 - RPB2 inter...

40H

RPB11 - RPB2 interaction site
40H, 65H, 66P
CDD
cd06926 (RNAP_II_RPB11)

65H

RPB11 - RPB2 interaction site
40H, 65H, 66P
CDD
cd06926 (RNAP_II_RPB11)

66P

RPB11 - RPB2 interaction site
40H, 65H, 66P
CDD
cd06926 (RNAP_II_RPB11)
RPB11 - RPB8 inter...

57L

RPB11 - RPB8 interaction site
57L
CDD
cd06926 (RNAP_II_RPB11)

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed RNA polymerase activity
GO:0046983 protein dimerization activity

Cellular Component