Protein

KWMTBOMO04681

Length
1,727 amino acids

Protein family membership

Domains and repeats

  1. Domain
  2. Domain
  3. Domain
  4. Domain
1 200 400 600 800 1000 1200 1400 1600 1727

Detailed signature matches

  1. Family IPR017072
    Transcription elongation factor Spt6
    1. PIRSF036947 (Spt6)
  2. Domain IPR028083
    Spt6 acidic, N-terminal domain
    1. PF14632 (SPT6_acidic)
  3. Domain IPR028088
    Helix-turn-helix DNA-binding domain of Spt6
    1. PF14641 (HTH_44)
  4. Domain IPR023319
    Tex-like protein, HTH domain
    1. G3DSA:1.10.10...
  5. Domain IPR023323
    Tex-like domain
    1. G3DSA:1.10.35...
  6. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
  7. Domain IPR006641
    YqgF/RNase H-like domain
    1. G3DSA:3.30.42...
    2. SM00732 (rnase_8s)
  8. Domain IPR028231
    Transcription elongation factor Spt6, YqgF domain
    1. PF14639 (YqgF)
  9. Domain IPR032706
    Transcription elongation factor Spt6, helix-hairpin-helix motif
    1. PF14635 (HHH_7)
  10. Domain IPR010994
    RuvA domain 2-like
    1. SSF47781 (RuvA doma...)
  11. Domain IPR023097
    Tex RuvX-like domain
    1. G3DSA:1.10.15...
  12. Domain IPR027999
    Death-like domain of Spt6
    1. PF14878 (DLD)
  13. Domain IPR012340
    Nucleic acid-binding, OB-fold
    1. SSF50249 (Nucleic a...)
  14. Domain IPR022967
    RNA-binding domain, S1
    1. SM00316 (S1_6)
  15. Domain IPR003029
    S1 domain
    1. PS50126 (S1)
    2. PF00575 (S1)
  16. Domain IPR000980
    SH2 domain
    1. SM00252 (SH2_5)
    2. PS50001 (SH2)
    3. SSF55550 (SH2 domain)
    4. G3DSA:3.30.50...
    5. PF14633 (SH2_2)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:2.40.50...
  3. SSF158832 (Tex N-te...)
  4. cd00164 (S1_like)
  5. cd09918 (SH2_Nterm_...)
  6. cd09928 (SH2_Cterm_...)
  7. mobidb-lite (disord...)

Residue annotation

  1. RNA binding site c...
  2. phosphotyrosine bi...
  3. hydrophobic bindin...
  4. phosphotyrosine bi...
  5. hydrophobic bindin...

GO term prediction

Biological Process

GO:0006139 nucleobase-containing compound metabolic process
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0032784 regulation of DNA-templated transcription, elongation

Molecular Function

GO:0003676 nucleic acid binding
GO:0003677 DNA binding

Cellular Component

None predicted.