KWMTBOMO01406

Protein

Length

102 amino acids

Protein family membership

None predicted.

Domains and repeats

Domain
15 - 97
LSM domain (IPR010920)
LSM domain, eukaryotic/archaea-type (IPR001163)

1 10 20 30 40 50 60 70 80 90 102

Detailed signature matches

IPR010920

LSM domain
1. SSF50182 (Sm-like r...)
  
  15 - 97
  
  SUPERFAMILY
  SSF50182 (Sm-like ribonucleoproteins)
IPR001163

LSM domain, eukaryotic/archaea-type
1. SM00651 (Sm3)
  
  18 - 96
  
  SMART
  SM00651 (Sm3)
2. PF01423 (LSM)
  
  20 - 96
  
  Pfam
  PF01423 (LSM)

no IPR

Unintegrated signatures

G3DSA:2.30.30...

14 - 97

GENE3D
G3DSA:2.30.30.100 (G3DSA:2.30.30.100)
cd01730 (LSm3)

15 - 96

CDD
cd01730 (LSm3)

Residue annotation

putative oligomer ...

20I

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

23S

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

24L

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

29Y

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

31K

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

32M

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

33R

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

36R

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

38L

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

43H

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

44A

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

45Y

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

46D

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

49L

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

50N

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

52V

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

83M

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

84L

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

85F

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

86V

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

87R

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

88G

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

89D

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

90G

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

91V

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

92I

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

93L

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

94V

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)

95S

putative oligomer interface
20I, 23S, 24L, 29Y, 31K, 32M, 33R, 36R, 38L, 43H, 44A, 45Y, 46D, 49L, 50N, 52V, 83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V, 95S
CDD
cd01730 (LSm3)
Sm1 motif cd01730

28I

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

29Y

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

30V

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

31K

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

32M

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

33R

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

34N

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

36R

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

37E

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

38L

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

39R

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

40G

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

41K

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

42L

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

43H

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

44A

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

45Y

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

46D

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

47Q

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

48H

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

50N

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

51M

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

52V

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

53L

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)

54G

Sm1 motif
28I, 29Y, 30V, 31K, 32M, 33R, 34N, 36R, 37E, 38L, 39R, 40G, 41K, 42L, 43H, 44A, 45Y, 46D, 47Q, 48H, 50N, 51M, 52V, 53L, 54G
CDD
cd01730 (LSm3)
putative RNA bindi...

46D

putative RNA binding site
46D, 48H, 87R
CDD
cd01730 (LSm3)

48H

putative RNA binding site
46D, 48H, 87R
CDD
cd01730 (LSm3)

87R

putative RNA binding site
46D, 48H, 87R
CDD
cd01730 (LSm3)
Sm2 motif cd01730

83M

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

84L

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

85F

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

86V

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

87R

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

88G

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

89D

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

90G

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

91V

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

92I

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

93L

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

94V

Sm2 motif
83M, 84L, 85F, 86V, 87R, 88G, 89D, 90G, 91V, 92I, 93L, 94V
CDD
cd01730 (LSm3)

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.

Filter view on

Entry type

Status

Per-residue features

KWMTBOMO01406

Protein family membership

Domains and repeats

Detailed signature matches

Residue annotation

GO term prediction

Biological Process

Molecular Function

Cellular Component