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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000028-TA|BGIBMGA000028-PA|undefined
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    33   0.12 
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    29   1.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.3  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    27   4.3  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   4.3  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    27   7.6  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    27   7.6  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   7.6  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   7.6  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    26   10.0 

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 34/194 (17%), Positives = 84/194 (43%), Gaps = 15/194 (7%)

Query: 191 LEKAHLYWDIFI--NSEVGKLVWEKTGMKKMFKAFTGPDGKISFETMFKNFENTSFRRHW 248
           + KA LY  + I  ++ +    + K     +F   + P   ++FE +F   +      + 
Sbjct: 234 IPKASLYDTVLILCSTYISTYSYSKLAQSVIFNLISSPVSNLAFENVFNILQYNRSNVNA 293

Query: 249 IKASAKYLTDMAVHVTKPENCVLHRYISMAEYVINSFMESQGFPNSIQFNAKAPAKSLTA 308
           ++ + + +  + +   K +        ++A   ++S +E   FP  + FN     + L  
Sbjct: 294 VRGAVRLMRFLMLQEVKND--------AIASITLSSSIEFTEFP--LGFNENVDFEILGT 343

Query: 309 IINYLLKTYMDFDADVTEY--VVPAVEYAKQTLKL-AEKAAQSVATREDYAAVSDRLTDA 365
           +  +L    +    +  ++  ++  + Y  Q L L A  + ++ +    +A + DR+ D 
Sbjct: 344 VYLFLRTPSILNRLNFLDWHRILNILMYCSQYLPLKASTSKEAFSKTAAFANIYDRVLDF 403

Query: 366 LNLEVIEPVLRVYR 379
           L+ E + P+L+ ++
Sbjct: 404 LDFEALIPLLQQFQ 417


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/84 (19%), Positives = 31/84 (36%)

Query: 283 NSFMESQGFPNSIQFNAKAPAKSLTAIINYLLKTYMDFDADVTEYVVPAVEYAKQTLKLA 342
           +S + +   P+S   +A     ++ +       T++D   D  E V+P   Y   TL   
Sbjct: 131 SSILSNSTIPSSSSISASTITTTIISGSTQFTTTFVDQSIDTVEVVIPTAGYITTTLTSG 190

Query: 343 EKAAQSVATREDYAAVSDRLTDAL 366
                S  T +  +     L + +
Sbjct: 191 SSYPVSTTTLQTVSGTQSGLVEVI 214


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 139 DNLMNLASSFTQNKEGGSYMPLIMSALKGFTKMEADKKADEHKDHASFLPP 189
           D +  ++SS + + + G+  P   S+L     ++    AD H  H+S  PP
Sbjct: 164 DPVATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPP 214


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 436 WDLYNAIQSDVNCEAAYPADCSAFHE---HELRVTTEPY 471
           W +  +  S++NC      DC   H    H L ++T  +
Sbjct: 274 WSIQRSNDSNINCSTCLDVDCQHLHSLDTHSLDISTHTF 312


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 58  IGNLMQGDNVKNLASLFNNEKEEKEKDSGNIGDILSGLGSLMG-GQDGKIDPAMIGGMI 115
           + +L+QG N+K +       K E+ + + N   I+   G L+    DG ID + +G ++
Sbjct: 256 LNSLIQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLV 314


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 301 APAKSLTAIINYLLKT-YMDFDADVTEYVVPAVEYAKQT 338
           APA ++ A ++  +   ++  DAD  EYV+ + E+ KQ+
Sbjct: 48  APAIAIVAALSVAVGLKHLSEDADAKEYVINSFEHLKQS 86


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 281 VINSFMESQGFPNSIQFNAKAPAKSLTAIINYLLKTYMDFDADVTEYVVPAVEYAKQTLK 340
           ++    E+ G P +  F   +PA +   +    ++  + F +D+TE+   A  YA+    
Sbjct: 242 LVKELRENIGIPAAASFKHVSPAGAAVGLPLSDVEKKVYFVSDITEFTPLACAYAR---- 297

Query: 341 LAEKAAQSVATREDYAAVSD 360
              + A  +++  D+ A+SD
Sbjct: 298 --ARGADRMSSFGDFIALSD 315


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 309 IINYLLKTYMDFDADVTEYVVPAVEY 334
           II+YLLK   D DA++ E    AV Y
Sbjct: 296 IIDYLLKNRRDIDAELYEPFQTAVRY 321


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 243 SFRRHWIKASAKYLTDMAVHVTKPENCVLHRYIS 276
           SFR  W+    KY  +  +H+  PE  +   Y+S
Sbjct: 260 SFRNGWLVLYDKYRHEQPLHIVVPEKNLKSLYLS 293


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 85  SGNIGDILSGLGSLMGGQD-GKIDPAMIGGMISMFASMGSTPKR 127
           S N GDI      LMGG   G        GM++ F +M   P+R
Sbjct: 478 SMNFGDISKMANMLMGGGGPGGAGGMDFSGMLNQFQNMQKPPRR 521


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,631
Number of Sequences: 5004
Number of extensions: 82220
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 11
length of query: 475
length of database: 2,362,478
effective HSP length: 75
effective length of query: 400
effective length of database: 1,987,178
effective search space: 794871200
effective search space used: 794871200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)

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