GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000029-TA|BGIBMGA000029-PA|IPR002415|High mobility
group-like nuclear protein, IPR004038|Ribosomal protein
L7Ae/L30e/S12e/Gadd45, IPR004037|Ribosomal protein L7AE
         (156 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    48   1e-07
AM042695-1|CAJ14970.1|  396|Anopheles gambiae 3-hydroxykynurenin...    23   5.9  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    23   5.9  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    23   5.9  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score = 48.4 bits (110), Expect = 1e-07
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 57  SNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKD 116
           S   N +R G+  V K +   +  +V  A D+ PIE++ +LPA+C +  V YC    +  
Sbjct: 136 SKRANQLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKAR 195

Query: 117 IGAAMGTMRGCIMVLVKEHED 137
           +G  +   + C  V + + E+
Sbjct: 196 LGTLV-YRKTCTCVALTQFEN 215


>AM042695-1|CAJ14970.1|  396|Anopheles gambiae 3-hydroxykynurenine
           transaminase protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 88  ISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 122
           +  +  +C +P   ++ ++   YT ++K +GA  G
Sbjct: 178 VDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPG 212


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 13  DQADVSIKAEPQSHDEKVEHCSIIA 37
           +Q D+  +  P S   +V+HC++IA
Sbjct: 158 EQCDILQEMFPDSSFIEVKHCTLIA 182


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 101 CEEKDVQYCYTPSRKDIGAAMGTMRG 126
           C ++   +CY P+  + G+ M    G
Sbjct: 522 CHQECKDFCYGPNEDNCGSCMNVKDG 547


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,764
Number of Sequences: 2123
Number of extensions: 4846
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 156
length of database: 516,269
effective HSP length: 59
effective length of query: 97
effective length of database: 391,012
effective search space: 37928164
effective search space used: 37928164
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)