GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000018-TA|BGIBMGA000018-PA|IPR000875|Cecropin,
IPR003254|Insect immunity protein and cecropin
         (59 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069801-1|AAL39946.1|  766|Drosophila melanogaster SD03967p pro...    26   5.4  
AE014134-294|AAN10460.1|  766|Drosophila melanogaster CG17646-PB...    26   5.4  
AE014134-293|AAF51341.3|  766|Drosophila melanogaster CG17646-PA...    26   5.4  
AB010795-3|BAA28734.1|   63|Drosophila melanogaster cecropin A2 ...    26   5.4  
AB010796-1|BAA28736.1|   63|Drosophila melanogaster cecropin A1 ...    26   7.2  
AF018980-1|AAB82477.1|   63|Drosophila melanogaster cecropin A2 ...    25   9.5  

>AY069801-1|AAL39946.1|  766|Drosophila melanogaster SD03967p
           protein.
          Length = 766

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 5   RIIFFLFVVVFATASAKPWNFF 26
           RI +F+ + + A+ SA+ W FF
Sbjct: 623 RIYYFMLLGIMASLSAQAWGFF 644


>AE014134-294|AAN10460.1|  766|Drosophila melanogaster CG17646-PB,
           isoform B protein.
          Length = 766

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 5   RIIFFLFVVVFATASAKPWNFF 26
           RI +F+ + + A+ SA+ W FF
Sbjct: 623 RIYYFMLLGIMASLSAQAWGFF 644


>AE014134-293|AAF51341.3|  766|Drosophila melanogaster CG17646-PA,
           isoform A protein.
          Length = 766

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 5   RIIFFLFVVVFATASAKPWNFF 26
           RI +F+ + + A+ SA+ W FF
Sbjct: 623 RIYYFMLLGIMASLSAQAWGFF 644


>AB010795-3|BAA28734.1|   63|Drosophila melanogaster cecropin A2
          protein.
          Length = 63

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 1  MNFTRIIFFLFVVVFATA--SAKPW--NFFKEIERAVARTRDAVI 41
          MNF  I  F+ +++  T   S   W     K+IERA   TRDA I
Sbjct: 1  MNFYNIFVFVALILAITIGQSEAGWLKKIGKKIERAGQHTRDATI 45


>AB010796-1|BAA28736.1|   63|Drosophila melanogaster cecropin A1
          protein.
          Length = 63

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 1  MNFTRIIFFLFVVVFATA--SAKPW--NFFKEIERAVARTRDAVI 41
          MNF  I  F+ ++V  T   S   W     K+IER    TRDA I
Sbjct: 1  MNFYNIFVFVALIVAITIGQSEAGWLKKIGKKIERVGQHTRDATI 45


>AF018980-1|AAB82477.1|   63|Drosophila melanogaster cecropin A2
          protein.
          Length = 63

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 1  MNFTRIIFFLFVVVFATA--SAKPW--NFFKEIERAVARTRDAVI 41
          MNF  I+ F+ +++  T   S   W     K+IER    TRDA I
Sbjct: 1  MNFYNILVFVALILAITIGQSEAGWLKKIGKKIERVGQHTRDATI 45


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.338    0.143    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,045
Number of Sequences: 52641
Number of extensions: 20056
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 6
length of query: 59
length of database: 24,830,863
effective HSP length: 40
effective length of query: 19
effective length of database: 22,725,223
effective search space: 431779237
effective search space used: 431779237
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 53 (25.4 bits)