Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002355-TA|BGIBMGA002355-PA|IPR000672|Tetrahydrofolate
dehydrogenase/cyclohydrolase
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 255 3e-68
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 252 3e-67
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 225 3e-59
08_02_0420 - 16911814-16912851 32 0.49
12_01_0601 - 4907397-4907685,4908592-4909100 30 2.0
03_05_0900 + 28627221-28629536 30 2.0
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 30 2.6
12_01_0523 + 4162673-4164427 29 3.5
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796... 29 6.0
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 255 bits (625), Expect = 3e-68
Identities = 138/298 (46%), Positives = 191/298 (64%), Gaps = 15/298 (5%)
Query: 1 MARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFV 60
MA+I+DGKA+A +I++E+ +A S N P + +IVG S TYV+ K +A V
Sbjct: 1 MAQIIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEV 60
Query: 61 GIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDID 120
GI ++ ++ DI+E L++E+ LN D +V GILVQLP+P INE ++ + I+ EKD+D
Sbjct: 61 GIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEISLEKDVD 120
Query: 121 GFHIINIGRLCVD--LPTIVPATALAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMML 178
GFH +NIG+L + P +P T +E+L R + G+ AVV+GRS VG+P++++L
Sbjct: 121 GFHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLL 180
Query: 179 HSDKRHESGLGMDATVTICHRYTPKDKLEAYCRNADIIITATGLPKLIKADMVKPGATII 238
L DATV+I H TP E+ R ADI+I A G +IK D +KPGA +I
Sbjct: 181 ---------LKADATVSIVHSRTPNP--ESIVREADIVIAAAGQAMMIKGDWIKPGAAVI 229
Query: 239 DVGITRITDENGKS--RLVGDVDYEEVSKIAGAITPVPGGVGPMTVAMLMHNTFQAAQ 294
DVG I+D KS RLVGDVD+ EVSK+AG +TPVPGGVGPMTVAML+ NT A+
Sbjct: 230 DVGTNSISDPTRKSGYRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLLKNTVDGAK 287
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 252 bits (616), Expect = 3e-67
Identities = 136/297 (45%), Positives = 186/297 (62%), Gaps = 15/297 (5%)
Query: 2 ARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVG 61
A+I+DGK +A +I++E+ +IA+ P + I+VG S TYVRNK +A + VG
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVG 139
Query: 62 IDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDG 121
I + +N D +E+++L I N D SV GILVQLP+P +N+ + +A++ EKD+DG
Sbjct: 140 IKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVDG 199
Query: 122 FHIINIGRLCVD--LPTIVPATALAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 179
FH +NIGRL + P VP T +E+L R+ ++ G+ AVVIGRS VGMP A++L
Sbjct: 200 FHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQ 259
Query: 180 SDKRHESGLGMDATVTICHRYTPKDKLEAYCRNADIIITATGLPKLIKADMVKPGATIID 239
+ATV+I H T K E R ADI+I A G+ L++ +KPGA IID
Sbjct: 260 K---------ANATVSIVHSNTKKP--EEITRQADIVIAAVGVANLVRGSWIKPGAAIID 308
Query: 240 VGITRITDENGKS--RLVGDVDYEEVSKIAGAITPVPGGVGPMTVAMLMHNTFQAAQ 294
VGI + D RLVGDV YEE SKIAG ITPVPGGVGPMT+AML+ NT ++A+
Sbjct: 309 VGINPVDDPESPRGYRLVGDVCYEEASKIAGLITPVPGGVGPMTIAMLLSNTLESAK 365
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 225 bits (551), Expect = 3e-59
Identities = 121/297 (40%), Positives = 182/297 (61%), Gaps = 15/297 (5%)
Query: 2 ARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVG 61
A I+DGK++A +I+ ++ +++ Q + P + ++VGD S +YVR K++ + VG
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVG 157
Query: 62 IDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDG 121
I +L + TE+ ++ + NED SV GILVQLP+P ++E R+ AI+ EKD+DG
Sbjct: 158 IKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQHMDEERILSAISLEKDVDG 217
Query: 122 FHIINIGRLCV--DLPTIVPATALAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 179
FH +N+G L + P VP A A +E+L + I+ G++ VIGRSK VG+P +++L
Sbjct: 218 FHPLNVGNLALRSRKPLFVPCAAKACLELLLQSGIELMGKHVTVIGRSKVVGLPTSLLL- 276
Query: 180 SDKRHESGLGMDATVTICHRYTPKDKLEAYCRNADIIITATGLPKLIKADMVKPGATIID 239
+RH ATV+I H +T E R +DI+I+A G+ L++ +K GA +ID
Sbjct: 277 --QRHH------ATVSIIHAFTTNP--EEITRQSDIVISAAGVANLVRGSWLKKGAVVID 326
Query: 240 VGITRITDENGK--SRLVGDVDYEEVSKIAGAITPVPGGVGPMTVAMLMHNTFQAAQ 294
VG I D RL GDV +EE K+A AITPVPGGVGP+T+AML+ NT +A+
Sbjct: 327 VGTNPIEDPTSDYGYRLTGDVCFEEAVKLASAITPVPGGVGPVTIAMLLANTLDSAK 383
>08_02_0420 - 16911814-16912851
Length = 345
Score = 32.3 bits (70), Expect = 0.49
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 201 TPKDKLEAYCRNADII--ITATGLPKLIKADMVKPGATIIDVGITRITDENGKSRLVGDV 258
+P D+L +AD + + ++ P ++ D VK ++D G+T + G SRL
Sbjct: 148 SPADRLRVAAESADALAYMHSSASPPILHGD-VKSANILLDAGLTAKVSDFGASRLAPAA 206
Query: 259 DYEEVSKI 266
D EV+ +
Sbjct: 207 DEAEVATL 214
>12_01_0601 - 4907397-4907685,4908592-4909100
Length = 265
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 29 GNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNED 88
G R T R ++V D + HT + K + K +GI+ + +EE E+++ ++D
Sbjct: 163 GMRRLTQRTMLVDD--SDHTALFEKKASVKQIGIEEMRGKAKDVSSEEGNSEEVKSSDDD 220
Query: 89 -NSVDGILVQLPVPDTINERRVCDAIAPEKDIDGF 122
+ V G Q P D+ E + D A EK + F
Sbjct: 221 EDMVIGGYTQDPYDDSGLEDLLQDQDALEKSVKKF 255
>03_05_0900 + 28627221-28629536
Length = 771
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 140 ATALAVVEMLKRFNI--DTFGRNAVVIGRSKNVGMPIAMMLHSDKRHESGLGMDATV 194
A AL V + +K F I D F A+V G K+ M A+ L + R G+ DA V
Sbjct: 279 ADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRGSYGVKGDAVV 335
>04_01_0508 +
6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 29.9 bits (64), Expect = 2.6
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 3/126 (2%)
Query: 139 PATALAVVE--MLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTI 196
P AL+ +E + F ID ++ +++G + + + R + + T+
Sbjct: 763 PGVALSTIECGQFESFMIDNARKSTIMVGALHATSVKNFLFYMDNVREDDHDNIFKLFTV 822
Query: 197 CHRYTPKDKLEAYCRNADIIITATGLPKLIKADMVKPGATIIDVGI-TRITDENGKSRLV 255
R P N + + G+ D+V A + V I TRITD N +LV
Sbjct: 823 HVRCLPTPNTVDEKLNNQVEVIWNGIDGENNDDVVASIARVAAVEIITRITDPNYDQKLV 882
Query: 256 GDVDYE 261
G + E
Sbjct: 883 GRLSRE 888
>12_01_0523 + 4162673-4164427
Length = 584
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 113 IAPEKDIDGFHIINIGRLCVDLPTIVPATALAVVEMLKRFNIDTFGRNAVVIGRSKNVGM 172
+A F + C DL + A+ +L F D F + A+V+ SK +
Sbjct: 101 LAAALPFSSFAFTAAAKACADLSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQL 160
Query: 173 PIAMMLHSDKRHESGLGMDATVT 195
P+A L R S + +A ++
Sbjct: 161 PVARKLFDAIRDRSVVAWNAMIS 183
>12_01_1064 -
10978039-10978190,10978731-10978865,10979217-10979605,
10979669-10979892,10980011-10980172,10980256-10980906,
10981583-10981804
Length = 644
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 6 DGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDAL 65
D K++ ++I + K I W + T+ + +G +P +A + I+ L
Sbjct: 136 DPKSMTIDISENKKMVITPW-----KVKTVLGVPLGGEPLQLPDQDIMSDALADLAIE-L 189
Query: 66 TINRDSDITEEQLLSEIQNLNEDNSV 91
+ SDIT +L+ EI+N +D S+
Sbjct: 190 DLPPKSDITASRLIEEIKNRPKDPSM 215
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,579,256
Number of Sequences: 37544
Number of extensions: 362663
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 9
length of query: 301
length of database: 14,793,348
effective HSP length: 82
effective length of query: 219
effective length of database: 11,714,740
effective search space: 2565528060
effective search space used: 2565528060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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