Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002153-TA|BGIBMGA002153-PA|undefined
(174 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 30 0.91
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04) 30 1.2
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 29 2.1
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 28 3.7
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 28 3.7
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 27 6.4
>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 75 PYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPERRDDYR---PPAPLH 122
P DD + P P T+ RR P L P+P+R D + PP P H
Sbjct: 538 PKPQFDDTPTRAPPPPDMQTNPDTERRPPPLPPAPKRALDLKPNLPPVPTH 588
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 30.3 bits (65), Expect = 0.91
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 61 SYQELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPERRDDYRPPAP 120
SY P+++ Y+ + + P +P + T Y SP SPS Y P +P
Sbjct: 539 SYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPS---SPSYSPSSP 594
Query: 121 LHYEXXXXXXXXXXXXXXXLEQLTTPHAECEPLRITLTTPP 161
+ L Q T PH + T PP
Sbjct: 595 SFHHNLRPTPPPLPLSIPLLLQATPPHLQSTAQPRPTTVPP 635
>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
Length = 485
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 60 RSYQELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPER 111
RS+ E R R QPY ++ L +P + G+ R PE P P R
Sbjct: 29 RSFTEPRTPTGRSRQPYVNIHGQLVRPGSQGSDLN-----RNEPEPEPEPRR 75
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 85 KPPTPGAASTDGVYLRRSPELSPSPERRDDYRPPAP 120
KP T G AS DG + P SPSP R+ PP+P
Sbjct: 405 KPSTNGQASVDG---QLKPPSSPSPRRQTG--PPSP 435
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 69 HARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPE 110
H P+ H+ + + PG S +R +P LSP+ E
Sbjct: 526 HGMGPSPHLHVPSSPYVMYQPGVPSERSALMRNTPSLSPTSE 567
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 28.3 bits (60), Expect = 3.7
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 84 FKPPTPGAASTDGVYLRRSPELSPSPERRDDYRP--PAPLHYEXXXXXXXXXXXXXXXLE 141
+ P TP AST G + + +PSP +P P P+
Sbjct: 93 YTPYTP--ASTVGRMPPTTSQSTPSPAPFFQQQPLVPTPVTLGGTSAPASTAAPPLSYPA 150
Query: 142 QLTTPHA-ECEPLRITLTTPPQT 163
++PHA P ++ L+TPPQT
Sbjct: 151 PTSSPHAYPYSPAQVQLSTPPQT 173
>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 79 LDDALFKPPTPGAASTDGVYLRRSPELSPSPERRDDYRPPA 119
L + PP G Y +SP++SP P + Y P A
Sbjct: 874 LPSGVLSPPVYGKTFRLNGYNEKSPKVSPPPVKPKSYSPEA 914
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 88 TPGAASTDGVYLRRSPELSPSPERRDDYRPPAPLHYEXXXXXXXXXXXXXXXLEQLTTPH 147
TP A +T +P + +P + PP TTP
Sbjct: 96 TPPATTTPTKPTTTTPPATTTPTKPTTTTPPGTTT-PTKPTTTTPPATTTPTKPTTTTPP 154
Query: 148 AECEPLRITLTTPPQTSSRSAS 169
A P + T TTPP T++ + S
Sbjct: 155 ATTTPTKPTTTTPPATTTPTKS 176
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 88 TPGAASTDGVYLRRSPELSPSPERRDDYRPPAPLHYEXXXXXXXXXXXXXXXLEQLTTPH 147
TP A +T +P + +P + PPA TTP
Sbjct: 110 TPPATTTPTKPTTTTPPGTTTPTKPTTTTPPATTT-PTKPTTTTPPATTTPTKPTTTTPP 168
Query: 148 AECEPLRITLTTPPQTSS 165
A P + T TTPP T++
Sbjct: 169 ATTTPTKSTTTTPPATTT 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.131 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,522,925
Number of Sequences: 59808
Number of extensions: 200856
Number of successful extensions: 507
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 13
length of query: 174
length of database: 16,821,457
effective HSP length: 77
effective length of query: 97
effective length of database: 12,216,241
effective search space: 1184975377
effective search space used: 1184975377
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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