Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002142-TA|BGIBMGA002142-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (266 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 62 ALTSNNLQTAWSSKEVLVVRDLIANFEAIWEP 93
          +L  N+    W+  E   V+DL      +W+P
Sbjct: 57 SLEWNDYNLKWNESEYGGVKDLRITPNKLWKP 88


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 62 ALTSNNLQTAWSSKEVLVVRDLIANFEAIWEP 93
          +L  N+    W+  E   V+DL      +W+P
Sbjct: 57 SLEWNDYNLKWNESEYGGVKDLRITPNKLWKP 88


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,367
Number of Sequences: 317
Number of extensions: 1981
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 266
length of database: 114,650
effective HSP length: 56
effective length of query: 210
effective length of database: 96,898
effective search space: 20348580
effective search space used: 20348580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)