GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002073-TA|BGIBMGA002073-PA|IPR003020|HCO3- transporter,
eukaryote, IPR013769|HCO3- transporter, cytoplasmic
         (378 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17150.1 68415.m01980 RWP-RK domain-containing protein simila...    30   2.2  
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp...    29   3.9  
At4g16810.1 68417.m02538 expressed protein similar to vernalizat...    29   3.9  
At4g00920.1 68417.m00125 COP1-interacting protein-related simila...    29   3.9  
At5g58350.1 68418.m07306 protein kinase family protein contains ...    29   5.1  
At5g43720.1 68418.m05345 expressed protein                             29   6.8  
At5g14370.1 68418.m01679 expressed protein                             29   6.8  
At3g07170.1 68416.m00854 sterile alpha motif (SAM) domain-contai...    29   6.8  
At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putati...    28   8.9  

>At2g17150.1 68415.m01980 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 909

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 246 WIKYEEDVEEGSARWGRPHVASLSFHSLLNLRRCLETGVVLLDLDEKDLPGVAYRV 301
           W+  +++ +     W +PH+ +  + SL   R   ET     D   KD  G+  RV
Sbjct: 149 WVPIQQEGKSFLTTWAQPHLFNQEYSSLAEYRHVSETYNFPADEGMKDFVGLPGRV 204


>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 930

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/81 (20%), Positives = 38/81 (46%)

Query: 116 KSRKYSLQEGGERTASDDEGLEESQRDQLSHRTDDPRALRRHKIQPKTSTVHVGRKDGGD 175
           KSRK   +  G+R+  +D    ES  D+   +  + +   R+  +  +S+ +  R   G 
Sbjct: 819 KSRKKREKSPGKRSGGNDLSSSESSGDERRRKRYNKKDRHRNDSESDSSSDYHSRDKQGS 878

Query: 176 KVQNILPDATYKKMYDHSPHA 196
           + ++   +++ +K   H  H+
Sbjct: 879 RSRSKRRESSREKRSSHKKHS 899


>At4g16810.1 68417.m02538 expressed protein similar to vernalization
           2 protein [Arabidopsis thaliana] GI:16945788, embryonic
           flower 2 [Arabidopsis thaliana] GI:14276050,
           fertilization-independent seed 2 protein [Arabidopsis
           thaliana] GI:4185499
          Length = 623

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 158 KIQPKTSTVHVGRKDGGDKVQNILPDATYKKMYDHSPHAVSDAELQIRT 206
           KI+ +  TV +GR D  D  +NI  D   +   D   +AVSD +++ R+
Sbjct: 384 KIKSRQETVGLGRLDSNDYKENIATDTAKEVSLD---NAVSDQKMEKRS 429


>At4g00920.1 68417.m00125 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646
          Length = 314

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 124 EGGERTASDDEGLEESQRDQLSHRTDDPRALRRHKIQPKTSTVHVGRKDGGDKVQNILPD 183
           E GE++ + D  L + + +  SH+ DD R +             + + DG D      P+
Sbjct: 168 EKGEKSVATDIALVDDENE--SHKDDDVRVVEDINQSADVENEGINKDDGVDATSESFPN 225

Query: 184 ATYKK 188
           +T +K
Sbjct: 226 STGEK 230


>At5g58350.1 68418.m07306 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 571

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 137 EESQRDQLSHRTDDPRALRRHKIQPKTSTVHVGRKDGGDKVQNILPDATYKKMYDHS 193
           +E+  D   HRTD   +   H    + S  +   +   D VQ+ L D TY +   HS
Sbjct: 398 DETPHDHHRHRTDSFHSSSSHASSSQASLSNYMARGLQDWVQDDLHDETYSQSSSHS 454


>At5g43720.1 68418.m05345 expressed protein
          Length = 329

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/76 (22%), Positives = 36/76 (47%)

Query: 123 QEGGERTASDDEGLEESQRDQLSHRTDDPRALRRHKIQPKTSTVHVGRKDGGDKVQNILP 182
           Q+   R A + +    +++ +   R    R++RR +   +TS+ HVG  D  +++  +  
Sbjct: 72  QDAHARLAVERKIFFRNRKIKFFERRKIERSIRRLEKLQRTSSAHVGDVDIAEQLSKLKE 131

Query: 183 DATYKKMYDHSPHAVS 198
           D  Y + +  +   VS
Sbjct: 132 DLEYVRFFPKNEKYVS 147


>At5g14370.1 68418.m01679 expressed protein
          Length = 339

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 232 ATEDGEAEWKETA--RWIKYEEDVEEGSARWGRP 263
           A   G +E +ET   RW+ Y E VEE  +R G P
Sbjct: 181 AMRKGASEEEETTEERWVSYSEVVEEVMSRSGTP 214


>At3g07170.1 68416.m00854 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 203

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 123 QEGGERTASDDE---GLEESQRDQLSHRTDDPRALRRHKIQPKTSTVHVGRKDG 173
           Q  G+R   DD+    L  S + QLS+R  DPR LR  K+Q +      GR+ G
Sbjct: 33  QVTGKRQRQDDKWEHDLFSSDKPQLSNRRVDPRDLRL-KLQKRHHGSQSGREAG 85


>At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putative
           (RIBA) similar to SP|P47924 {Arabidopsis thaliana},
           SP|P51695 Riboflavin biosynthesis protein ribA
           [Includes: GTP cyclohydrolase II (EC 3.5.4.25);
           3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
           synthase)] {Bacillus amyloliquefaciens}; contains Pfam
           profiles PF00925: GTP cyclohydrolase II, PF00926:
           3,4-dihydroxy-2-butanone 4-phosphate synthase
          Length = 384

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 114 GHKSRKYSLQEGGERT--ASDDEGLEESQRDQ-LSHRTDDPRALRRHKIQPKTSTVHVGR 170
           GHK R Y+LQ+ G  T  A+++ GL    R+  +  +      +R  K+       +VG 
Sbjct: 271 GHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGL 330

Query: 171 KDGGDKVQNILP 182
           K  G  +   +P
Sbjct: 331 KGYGLAIVGRVP 342


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,352,512
Number of Sequences: 28952
Number of extensions: 316393
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 9
length of query: 378
length of database: 12,070,560
effective HSP length: 82
effective length of query: 296
effective length of database: 9,696,496
effective search space: 2870162816
effective search space used: 2870162816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)