GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002045-TA|BGIBMGA002045-PA|IPR006759|Glycosyl
transferase, family 54
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35030.1 68415.m04297 pentatricopeptide (PPR) repeat-containi...    33   0.49 
At5g53670.1 68418.m06666 hypothetical protein similar to unknown...    32   0.85 
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    30   2.6  
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain...    30   3.4  
At3g48290.1 68416.m05270 cytochrome P450, putative very strong s...    30   3.4  
At1g49840.1 68414.m05588 expressed protein contains Pfam profile...    29   7.9  

>At2g35030.1 68415.m04297 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 627

 Score = 32.7 bits (71), Expect = 0.49
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 259 PHWIFIEFCQVGAIGKVFRTRDLLP---FVTYSQIFYSNMPIDWLLES-YLADRVCSIDK 314
           P W+  E C+VG I +  +  D LP    VT++ +    + +  + E+  L DRV S   
Sbjct: 49  PEWLIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKN 108

Query: 315 KSLCPAAAKKYKRLEKKSCAESKLRVRP-RYKVSLFQHIGVYSSLQGKIQK 364
                A    Y R ++ S AE   +  P R  VS    I  Y+   G+I K
Sbjct: 109 VVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQ-SGRIDK 158


>At5g53670.1 68418.m06666 hypothetical protein similar to unknown
           protein (pir |T17429)
          Length = 244

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 202 SPKRAMWRTKQNLDNIYLMAYAISKGVYYLMLEDDVTTKKDFLPEMKGYIKTTTE 256
           SPK      + N  +I +M   I +G +  ++ DDVTT KDFL  ++ +     E
Sbjct: 73  SPKELKHWDRSNRVSIMIMKIRIPQG-FRGVVPDDVTTAKDFLASLENFFAKNEE 126


>At4g15180.1 68417.m02328 SET domain-containing protein contains Pfam
            profile PF00856: SET domain
          Length = 2326

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 314  KKSLCPAAAKKYKRLEKKSCAESKLRVRPRYKVSLFQHIGVYSSLQGKIQKVQDPQFGKV 373
            K SL P   +KY+ +EK +    +  V+ + +VSL +  G   + Q    +  D +  +V
Sbjct: 1594 KASLVPPVTRKYEVIEKYAIVADEEEVQRKMRVSLPEDYGEKLNAQRNGIEELDMELPEV 1653

Query: 374  QSYFPHQ 380
            + Y P +
Sbjct: 1654 KEYKPRK 1660


>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 443

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 293 SNMPIDWLLESYLADRVCSIDKKSLCPAAAKKYKRLEKKSCAESKLRVRPRYKVSLFQHI 352
           S M ID  L+ +L +   +  K S+      K+   EKK C  +++ +R ++      + 
Sbjct: 140 SEMQIDVELKFFLYNH--NAKKYSVFQDGTVKHYSKEKKECGFAQMLLRSKFNDPKNGYT 197

Query: 353 GVYSSLQGKIQKVQDPQFGKVQSYFPHQNPPAQKITTTIEDYYQHSIQNAYEGIDFFWGK 412
              + + G    V  P   KV+     QNPP  K T  I D+ +   +  +   +F  G+
Sbjct: 198 DGDACIVGVEIFVIKP-IEKVERVVFTQNPPTNKFTWKISDFSKLGDKKYHYSDEFVVGE 256

Query: 413 K 413
           +
Sbjct: 257 R 257


>At3g48290.1 68416.m05270 cytochrome P450, putative very strong
           similarity to Cytochrome P450 71A24
           (SP:Q9STK9)[Arabidopsis thaliana];
          Length = 488

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 101 HLSGARHYMDFVIGIPTVKRDKQTYLFTTLTYLIKALSAEDKRSVVIVILVGEPDVTYIL 160
           H+ G  H  DFV  + T++R+K      ++ + I  LS    +++++ + VG+ D TY L
Sbjct: 251 HVDGDGHKNDFVDFLLTIEREK------SVGFEIDRLSI---KAIILDVFVGDMDTTYTL 301

Query: 161 KLARQIEIMFPREISDGVIE 180
                 E++   E  D + E
Sbjct: 302 LEWAMTELLCHHECLDRLQE 321


>At1g49840.1 68414.m05588 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 494

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 331 KSCAESK-LRVRPRYKVSLFQHI--GVYSSLQGKIQKVQDPQFGKVQSYFPHQNPPAQKI 387
           K C + + LR R      + +HI  G +S   G + +++D Q  ++QS           I
Sbjct: 316 KLCTDPETLRARSEGPAEIVRHILFGYFSQRTGLLAQIEDSQLTRIQSNDGDAVYWETTI 375

Query: 388 TTTIEDYYQ-HSIQNAYEG 405
            ++++DY Q   I  A+ G
Sbjct: 376 NSSLDDYKQVEGIMIAHSG 394


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,263,913
Number of Sequences: 28952
Number of extensions: 441683
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 6
length of query: 432
length of database: 12,070,560
effective HSP length: 83
effective length of query: 349
effective length of database: 9,667,544
effective search space: 3373972856
effective search space used: 3373972856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)