GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002022-TA|BGIBMGA002022-PA|undefined
         (136 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40450.1 68418.m04905 expressed protein                             32   0.16 
At2g07070.1 68415.m00807 AT hook motif-containing protein contai...    27   3.3  
At1g51745.1 68414.m05831 expressed protein                             27   3.3  
At2g27460.1 68415.m03319 sec23/sec24 transport family protein we...    27   4.4  
At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid ...    26   7.7  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    26   7.7  

>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 53  LQAPYL-GPYKVLRRDEKTVDIEVQGKTQKVTIDRVKPAYVAREDLNASQSRIQSPN 108
           LQ P L  P +VL    KTVD +++ KT  + +  +     +  DL   Q     PN
Sbjct: 937 LQKPTLESPSEVLEESSKTVDEKIEEKTDSIELGEIAQEERSVTDLTPLQEESSQPN 993


>At2g07070.1 68415.m00807 AT hook motif-containing protein contains
           Pfam profile PF02178: AT hook motif
          Length = 501

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 75  VQGKTQKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKNVKP 121
           +  K+QK  + R  P      +L +S + +Q  NP  +  C K+ KP
Sbjct: 281 IGAKSQKRNLVRNSPKKGTGSNLPSSFAALQGGNPSSKAACPKSKKP 327


>At1g51745.1 68414.m05831 expressed protein
          Length = 635

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 52  SLQAPYLG-PYKVLRRDEKTVDIEVQGKTQKVTIDRVKPAYVAREDLNASQSRIQSPNPV 110
           SL  P +G P K+L RD+ +VD  +   ++ V   R        E   AS S+ +S    
Sbjct: 44  SLVGPKVGTPIKLLGRDDVSVDWYILENSKTVKAFRCGEYDTCIEKAKASSSKKRSGKCT 103

Query: 111 IRVPCAKNVKPRPLQHVA 128
           +R     N      +H+A
Sbjct: 104 LREDAINNALKIENEHLA 121


>At2g27460.1 68415.m03319 sec23/sec24 transport family protein weak
           similarity to SP|P53992 Protein transport protein Sec24C
           (SEC24-related protein C) {Homo sapiens}; contains Pfam
           domains PF04811: Sec23/Sec24 trunk domain, PF04815:
           Sec23/Sec24 helical domain and PF04810: Sec23/Sec24 zinc
           finger
          Length = 745

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 55  APYLGPYKVLRRDEKTVDIEVQGKTQKVTIDRVKPAYVAREDLNASQSRIQ 105
           A Y  P+ +       +D+E+     +  + + +P YVA  D+++S+  ++
Sbjct: 88  ARYSNPHSIPEMTSSFIDLEMPLDGSEEEMTQARPVYVAAIDISSSEEFLE 138


>At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid
          3'-hydroxylase (F3'H) / cytochrome P450 75B1 (CYP75B1)
          / transparent testa 7 protein (TT7) identical to
          SP|Q9SD85 Flavonoid 3'-monooxygenase (EC 1.14.13.21)
          (Flavonoid 3'-hydroxylase) (AtF3'H) (Cytochrome P450
          75B1) (TRANSPARENT TESTA 7 protein) {Arabidopsis
          thaliana}; similar to gi:10334806, gi:10334808
          Length = 513

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 7  RLRTHMSKLTPQPTSWYTSSSRPFYVPKDLRTATHVFLRQGP 48
          R R+H ++L P P  W    + P    K  RT + +    GP
Sbjct: 25 RNRSHNNRLPPGPNPWPIIGNLPHMGTKPHRTLSAMVTTYGP 66


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 54   QAPYLGPYKVLRRDEKTVDIEVQGKTQKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRV 113
            Q P      + R  E  +  E  G  QK   D     +++   L+AS ++I  P  +I+ 
Sbjct: 967  QKPQYSLRSLYRALEYAIKAEAIGGFQKALYDGFSMFFLSL--LDASSAKIVEP--IIKR 1022

Query: 114  PCAKNVKPRPLQHVAG 129
               +N++ +PLQ   G
Sbjct: 1023 ISGENIRSQPLQRYLG 1038


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,373
Number of Sequences: 28952
Number of extensions: 119827
Number of successful extensions: 314
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 12,070,560
effective HSP length: 74
effective length of query: 62
effective length of database: 9,928,112
effective search space: 615542944
effective search space used: 615542944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)