Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002019-TA|BGIBMGA002019-PA|IPR002893|Zinc finger,
MYND-type, IPR000770|SAND, IPR010919|SAND-like
(460 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 46 7e-05
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 44 3e-04
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 41 0.001
At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ... 40 0.005
At5g50450.1 68418.m06247 zinc finger (MYND type) family protein ... 38 0.014
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 38 0.014
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 33 0.30
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 33 0.52
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 32 0.92
At2g25410.1 68415.m03043 hypothetical protein 31 1.2
At1g78540.1 68414.m09154 transcription factor-related weak simil... 31 1.6
At2g34730.1 68415.m04265 myosin heavy chain-related low similari... 31 2.1
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a... 30 2.8
At3g10640.1 68416.m01280 SNF7 family protein contains Pfam domai... 30 3.7
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 30 3.7
At2g45240.1 68415.m05632 methionyl aminopeptidase, putative / me... 29 4.9
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 29 6.5
At4g09370.1 68417.m01546 hypothetical protein contains Pfam prof... 29 6.5
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 29 6.5
At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearl... 29 6.5
At1g70150.1 68414.m08072 zinc finger (MYND type) family protein ... 29 6.5
At1g23930.1 68414.m03019 hypothetical protein contains Pfam prof... 29 6.5
At4g38550.1 68417.m05458 expressed protein 29 8.5
At3g47650.1 68416.m05187 bundle-sheath defective protein 2 famil... 29 8.5
At1g64500.1 68414.m07312 glutaredoxin family protein 29 8.5
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 45.6 bits (103), Expect = 7e-05
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 386 HNVEDTESKKVQCANCNREASAECSLCRRTPYCSTYCQKKDWAS-HQIEC 434
H + S +C+ C + + +CS C+ YCS CQ DW S H+++C
Sbjct: 52 HRRDFMVSDTAECSVCGKATTKKCSRCKSVRYCSAACQTSDWKSGHKLKC 101
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 43.6 bits (98), Expect = 3e-04
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 398 CANCNREASAECSLCRRTPYCSTYCQKKDWAS-HQIEC 434
C+ C ++ +CS C+ YCS CQ+ DW+S HQ C
Sbjct: 61 CSVCGNFSTKKCSRCKSVRYCSAECQRSDWSSGHQRNC 98
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 154 RCKNT---SAELHKNKFGSGGRGRCIKYGIEWYTPSEFEALCGRAS 196
RCK+ SAE ++ + SG + C YGI TPS L RAS
Sbjct: 74 RCKSVRYCSAECQRSDWSSGHQRNCRDYGITTLTPSAKNGLRFRAS 119
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 361 LEQERTSALLAASVDDQVDPEQVLLHNVE---DTESKKVQCANCNREASAECSLCRRTPY 417
+ +E L+A + ++ E+V V+ D+ S +CA C + CS C+ Y
Sbjct: 17 VRREEVIRLIALATEESYLAEEVRPATVDYGGDSVSDVYRCAVCLYPTTTRCSQCKSVRY 76
Query: 418 CSTYCQKKDW-ASHQIEC 434
CS+ CQ W H+ EC
Sbjct: 77 CSSKCQILHWRRGHKEEC 94
>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
SET domain-containing protein contains Pfam profiles
PF00856: SET domain, PF01753: MYND zinc finger (ZnF)
domain; confirmed by cDNA (Paola Vittorioso--accession
not assigned yet (paola.vittorioso@uniroma1.it)
Length = 480
Score = 39.5 bits (88), Expect = 0.005
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 388 VEDTESKKVQCANCNREASAE-CSLCRRTPYCSTYCQKKDWASHQIEC 434
V + S + +C C + + + CS C+ YC + CQK +W H+ EC
Sbjct: 46 VPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93
>At5g50450.1 68418.m06247 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 336
Score = 37.9 bits (84), Expect = 0.014
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 409 CSLCRRTPYCSTYCQKKDW-ASHQIEC 434
CS+C + YCS CQ DW A H++EC
Sbjct: 279 CSVCGKVNYCSRGCQALDWRAKHKVEC 305
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 37.9 bits (84), Expect = 0.014
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 398 CANCNREASAECSLCRRTPYCSTYCQKKDW-ASHQIECL 435
CA C A CS C+ YCS CQ W +H+ EC+
Sbjct: 130 CARCFGPAKTRCSRCKSVRYCSGKCQIIHWRVAHKDECV 168
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 33.5 bits (73), Expect = 0.30
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 393 SKKVQCANCNREASAECSLCRRTPYCSTYCQKKDW-ASHQIEC 434
S C C A+ CS C+ YCS CQ W H+ EC
Sbjct: 69 SNVFHCPVCYCLATTRCSRCKAVRYCSGKCQIIHWRQGHKDEC 111
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 32.7 bits (71), Expect = 0.52
Identities = 17/85 (20%), Positives = 41/85 (48%)
Query: 297 LETTTDYQILGNPEIKTDPPPNVPDMSAVLKRLDDISETLVRLSTELKQCVEDVRRVSAR 356
+E + +++ E++T P P +V K + + ++++++ + + ED ++ +
Sbjct: 423 IENSAKFKLSSMSEVETIDTPEKPPTDSVKKFIAEDVHSVLQINNQEQNASEDATKLLHQ 482
Query: 357 QLERLEQERTSALLAASVDDQVDPE 381
+ L+ SA + VDD PE
Sbjct: 483 ESPSLKLVHHSATVKPLVDDSKSPE 507
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 31.9 bits (69), Expect = 0.92
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 409 CSLCRRTPYCSTYCQKKDW-ASHQIEC 434
CS+C YCS CQ DW H+++C
Sbjct: 320 CSVCGVVNYCSRACQALDWKLRHKMDC 346
>At2g25410.1 68415.m03043 hypothetical protein
Length = 377
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 406 SAECSLCRRTPYCSTYCQKKDWASHQIECLRSV-PAIHTDAQQHQSIMLI 454
S +C C R ++ C K+ SHQ+EC SV P +H Q IM +
Sbjct: 200 SPDCRDCERRT--NSRCGFKNNTSHQVECFSSVNPGLHNTGLQVLKIMCL 247
>At1g78540.1 68414.m09154 transcription factor-related weak
similarity to STAT protein (GI:2230824) and STATc
protein (GI:13235235) [Dictyostelium discoideum]
Length = 638
Score = 31.1 bits (67), Expect = 1.6
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 277 IHQSSENSHSKEAWQSIAEGLETTTDY---QILGNPEIKTDPPPNVPDMSAVLKRLDDIS 333
I Q S NS + W I G+ DY Q + NP P V +S KRL +I
Sbjct: 290 ISQLSSNSDDRLFW--IKFGIRNAKDYPFLQAVSNPIRCISVSPEVQPVSVTPKRLTNID 347
Query: 334 ETLVRLSTELKQCVEDVRRV 353
S +L Q V+R+
Sbjct: 348 HLSSTESPDLLQNTSSVKRI 367
>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
to SP|P14105 Myosin heavy chain, nonmuscle (Cellular
myosin heavy chain) {Gallus gallus}
Length = 825
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/73 (23%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 322 MSAVLKRLDDISETLVRLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVDPE 381
+ V ++++D+ + R TE++ +E + VSAR+LE+++ T +S+ ++++
Sbjct: 608 IEVVSQQINDLQSQVERQETEIQDKIEALSVVSARELEKVKGYETK---ISSLREELELA 664
Query: 382 QVLLHNVEDTESK 394
+ L ++D + K
Sbjct: 665 RESLKEMKDEKRK 677
>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
alpha glucosidase II beta subunit from GI:2104691 [Mus
musculus]
Length = 647
Score = 30.3 bits (65), Expect = 2.8
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 270 GESEVDNIHQSSENS---HSKEAWQSIAEGLETTTDYQILGNPEIKTDPPPNVPDMSAVL 326
G E D H S +N+ K A +++ + +ET ++ EI+ D +A L
Sbjct: 119 GSDEYDG-HVSCQNTCWEAGKAARENLKKKIETYNQGLVIRRQEIEQAKVGLEKD-AAEL 176
Query: 327 KRLDDISETLVRLSTELKQCVEDVRRVSAR---QLERLEQERTSALLAA 372
K+L + L L +LK E + +V + Q E+ E+E+ A LAA
Sbjct: 177 KKLKSEQKILKGLVDQLKDRKEQIEKVEEKERLQKEKEEKEKKEAELAA 225
>At3g10640.1 68416.m01280 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 235
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 313 TDPPPNVPDMS-AVLKRLDDISETLVRLSTELKQCVEDVRRVSARQLERLEQERTSALL 370
T+PPP++ D S + KR D + + + +L EL + E +++ + + R +L
Sbjct: 11 TEPPPSIQDASDRINKRGDSVEDKIKKLDVELCKYKEQLKKTRPGPAQEAVKARAMRVL 69
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 29.9 bits (64), Expect = 3.7
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 347 VEDVRRVSARQLERLEQERTSALLAASVDDQVDPEQ-VLLHNVEDTESKKVQCANCNREA 405
++D+ SAR E + +S A+VDDQ D E+ +VE + K Q A RE
Sbjct: 263 MKDIDIKSARVKEESPKPDSSKAGVATVDDQEDIEKSEPRFSVEQAQPVKFQNAYAKREP 322
Query: 406 SAECS 410
S+E S
Sbjct: 323 SSEFS 327
>At2g45240.1 68415.m05632 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to SP|Q01662 Methionine aminopeptidase
1 precursor (EC 3.4.11.18) {Saccharomyces cerevisiae};
contains Pfam profile PF00557: metallopeptidase family
M24
Length = 398
Score = 29.5 bits (63), Expect = 4.9
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 396 VQCANCNREASAECSLC-------RRTPYCSTYCQKKDWASHQ 431
+ CA C + A +C C + +C+ C K W+SH+
Sbjct: 13 LSCARCEKPAHLQCPKCIDLKLPREQASFCTQECFKAAWSSHK 55
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 29.1 bits (62), Expect = 6.5
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 282 ENSHSKEAWQSIAEGL--ETTTDYQILGNPEIKTDPPPNVPDMSAVLKRLDDISETLVRL 339
E K AW+S+ + L + T I NP D PD + R + + L
Sbjct: 111 ERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDS--HRFNRLGFLLT-- 166
Query: 340 STELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVDPEQVLLHNVEDTE 392
++E + DV + ER + R +LAA ++ P L+ +ED +
Sbjct: 167 NSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREEMQPPRMSLMELLEDND 219
>At4g09370.1 68417.m01546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 666
Score = 29.1 bits (62), Expect = 6.5
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 297 LETTTDYQILGNPEIKTDPPPNVPDMSAVLKR-LDDISETLVRLSTELKQ-C--VEDVRR 352
+ET D + PEI P ++ ++R D +++ L + +E+K+ C V+ +
Sbjct: 491 IETVDDVPAVPEPEI---PGTSILSFKEAMERGFDKLTDKLAVMDSEIKRICVRVQGIEE 547
Query: 353 VSARQLER-LEQERTSALLAASVDDQVDPEQVLLHNVEDTESK 394
A QLE+ E+++ + S D V P + DT+SK
Sbjct: 548 YVADQLEKEAEKDKYEDMRPGSAADFVPPS----YQPRDTQSK 586
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 29.1 bits (62), Expect = 6.5
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 319 VPDMSAVLKRLDDISETLVRLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQ- 377
+PD + + LD+I + +E+ + V V RQ++ EQE+ ++AA+ Q
Sbjct: 419 LPDGAIIF--LDEIDAFAISRDSEMHEATRRVLSVLLRQIDGFEQEKKVVVIAATNRKQD 476
Query: 378 VDP 380
+DP
Sbjct: 477 LDP 479
>At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearly
identical to topoisomerase 6 subunit B [Arabidopsis
thaliana] GI:12331188
Length = 670
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 330 DDISETLVRLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVDP-EQVLLHNV 388
DDISE + + ++QC ++ ++L+ EQ+ L+ + D +VL
Sbjct: 521 DDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVYEVLKQMT 580
Query: 389 EDTESKK 395
E+ ++K+
Sbjct: 581 EEHKTKR 587
>At1g70150.1 68414.m08072 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 387
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 401 CNREASAECSLCRRTPYCSTYCQKKDWASHQIECLR 436
C + C C YCS Q W+ H+ EC R
Sbjct: 12 CVGPPTRRCGQCGAVAYCSVSHQISHWSYHKEECER 47
>At1g23930.1 68414.m03019 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 649
Score = 29.1 bits (62), Expect = 6.5
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 297 LETTTDYQILGNPEIKTDPPPNVPDMSAVLKR-LDDISETLVRLSTELKQ-C--VEDVRR 352
+ET D + PEI P ++ ++R D +++ L + +E+K+ C V+ +
Sbjct: 472 IETVDDVPAVPEPEI---PGTSILSFKEAMERGFDKLTDKLAVMDSEIKRICVRVQGIEE 528
Query: 353 VSARQLER-LEQERTSALLAASVDDQVDPEQVLLHNVEDTESK 394
A QLE+ E+++ + S D V P + DT+SK
Sbjct: 529 YVADQLEKEAEKDKYEDMRPGSAADFVPPS----YQPRDTQSK 567
>At4g38550.1 68417.m05458 expressed protein
Length = 612
Score = 28.7 bits (61), Expect = 8.5
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 321 DMSAVLKRLDDISETLVRLSTELKQCVEDVRRVSAR--QLERLEQERTSAL-LAASVDDQ 377
D++A +++++ LV+ E+K+C E V V+ R QLE + L L S +
Sbjct: 543 DLTAKKGEMEEMTAELVKREKEIKECREKVTVVAGRLGQLEMKGSKLNKNLDLFQSKVHK 602
Query: 378 VDPEQVLLH 386
E VLLH
Sbjct: 603 FQGEAVLLH 611
>At3g47650.1 68416.m05187 bundle-sheath defective protein 2 family /
bsd2 family similar to bundle sheath defective protein 2
[Zea mays] GI:4732091
Length = 136
Score = 28.7 bits (61), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 386 HNVEDTESKKVQCANCNREASAECSLCR 413
+N + T+ + CANC E CS C+
Sbjct: 60 NNPQGTKPNSLVCANCEGEGCVACSQCK 87
>At1g64500.1 68414.m07312 glutaredoxin family protein
Length = 368
Score = 28.7 bits (61), Expect = 8.5
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 275 DNIHQSSENSHSKEAWQSIAEGLETTTDYQILGNPEIKTDPPPNVPDMSAVLKRLDDISE 334
D+ + + + W+ +++ LET + PE+ + PP P L R
Sbjct: 60 DDDDDDDDGDDAPKTWEEVSKSLETKLKPAAVKPPEVDSVKPPATPPRR--LPRKSASFH 117
Query: 335 TLVRLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVDPEQ 382
TL L K+ + + +L+R E + + L DD+ + Q
Sbjct: 118 TLDELEVRAKRSIAAQIPTTMVKLKRTE---SMSKLRPESDDRTESTQ 162
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.128 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,566,538
Number of Sequences: 28952
Number of extensions: 420132
Number of successful extensions: 967
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 27
length of query: 460
length of database: 12,070,560
effective HSP length: 84
effective length of query: 376
effective length of database: 9,638,592
effective search space: 3624110592
effective search space used: 3624110592
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
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