GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002015-TA|BGIBMGA002015-PA|IPR008381|ACN9
         (131 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa...    32   0.11 
At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme ...    29   1.0  
At5g65440.1 68418.m08230 expressed protein                             28   2.3  
At3g29110.1 68416.m03645 terpene synthase/cyclase family protein...    28   2.3  
At4g30560.1 68417.m04337 cyclic nucleotide-regulated ion channel...    26   9.4  
At3g53040.1 68416.m05846 late embryogenesis abundant protein, pu...    26   9.4  
At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot...    26   9.4  

>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 31  LGDNYARDEFKRHKKCNKDEAKIFLNEWTDYAINLAKQMKPLHQAKNKMVGE 82
           LG+  A  + +R K+ +  + +  L E T  A    +Q+K LH+ + KM+G+
Sbjct: 286 LGNKLATSDRERDKQRDLQDMETVLKELTVLASGRLQQLKNLHEERTKMLGK 337


>At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme
           oxygenase 2 [Arabidopsis thaliana]
           gi|4530595|gb|AAD22109
          Length = 354

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 22  RGLPPELRVLGDNYARDEFKRHKKCNKDEAKIF 54
           +G+  +L VLG++++RDE     KC K+ AK F
Sbjct: 313 KGVREKLNVLGEHWSRDE---KNKCLKETAKAF 342


>At5g65440.1 68418.m08230 expressed protein
          Length = 1050

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 38  DEFKRHKKCNKDEAKIFLNEWTDYAINLAKQM----KPLHQAKNKMVGEYLDP 86
           DE         DE  I +  W +YAI+L K +    K + +A  K   E L P
Sbjct: 764 DEMYERLNGTLDEYDIIIRRWPEYAISLEKVVADSEKAIVEAMEKQFTEILSP 816


>At3g29110.1 68416.m03645 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family;
           similar to epidermal germacrene C synthase  GB:AAC39431
           [Lycopersicon esculentum], (+)-delta-cadinene synthase
           GB:P93665 [Gossypium hirsutum]
          Length = 569

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 6   HVSRVRRLYKLIFRVHRGLPPELRVLGDNYA----RDEFKRHKKCNKDEAKI 53
           H   ++ ++K I         ELR  G +Y+    ++E+KR  K N D AK+
Sbjct: 354 HPDYLKVVFKFILNAFEECEKELRPQGRSYSLEQTKEEYKRFAKSNLDLAKL 405


>At4g30560.1 68417.m04337 cyclic nucleotide-regulated ion channel,
           putative similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc6 GI:4581207 from
           [Arabidopsis thaliana]
          Length = 733

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 9   RVRRLYKLIFRVHRGLPPELRVLGDNYARDEFKRHKKCNKDEAKIFLNEWTDYAINLAKQ 68
           RV+R     +  HR LPPELR     Y  D++K  +    DE  +  N   D   ++ + 
Sbjct: 445 RVKRRDSEQWMHHRMLPPELRERVRRY--DQYKWLETRGVDEENLVQNLPKDLRRDIKRH 502

Query: 69  MKPLHQAKNKMVGEYLDPSLLDHMSDEQIVQLY 101
           +  L   +   + E +D  LLD + +     LY
Sbjct: 503 L-CLALVRRVPLFENMDERLLDAICERLKPCLY 534


>At3g53040.1 68416.m05846 late embryogenesis abundant protein,
           putative / LEA protein, putative similar to LEA protein
           in group 3 [Arabidopsis thaliana] GI:1526424; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 479

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 48  KDEAKIFLNEWTDYAINLAKQMKPLHQAKNKMVGEY 83
           KD     L E+ DY ++ AK+ K     K K   EY
Sbjct: 190 KDTTAEKLGEYKDYTVDKAKEAKDKTAEKAKETAEY 225


>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase 3 [Mus musculus]
           GI:9652099; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 446

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 14  YKLIFRVHRGLPPELRVLGDNYARDEFKRHKKCNKDEAKIFLNEWTDYAINLAKQMKPLH 73
           Y  +  ++R LP ++RV+G + A  +F     C   E K F   W     NL   +  + 
Sbjct: 185 YDYVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFF--WRQ---NL--NLSAMD 237

Query: 74  QAKNKMVGEY 83
            A  K +GE+
Sbjct: 238 FAGKKFIGEH 247


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,065
Number of Sequences: 28952
Number of extensions: 111490
Number of successful extensions: 241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 8
length of query: 131
length of database: 12,070,560
effective HSP length: 74
effective length of query: 57
effective length of database: 9,928,112
effective search space: 565902384
effective search space used: 565902384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)