GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002010-TA|BGIBMGA002010-PA|IPR006603|Cystinosin/ERS1p
repeat
         (260 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.058
SB_17675| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.54 
SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)                    31   0.72 
SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046)               31   1.3  
SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)                 29   5.1  
SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)                 29   5.1  
SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)                  29   5.1  
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 18/72 (25%), Positives = 36/72 (50%)

Query: 147  PLSGFAKVTYIYGIIKSGNADAVSLTTWIISVLTNLARVFTVYVDSGDGKLLANFIISTL 206
            PL   +K+  I    ++G+   +S     +  +  +AR+FT   ++GD  +LA + ++T 
Sbjct: 988  PLMAISKLLQIVANFRNGHTGQLSFIMVFLLFVGAIARIFTTVQETGDTIMLATYCMTTA 1047

Query: 207  LSSGVFFTALHY 218
            L+  +    L Y
Sbjct: 1048 LNGILVAQVLFY 1059


>SB_17675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 77  IILFQVYVMFYFVLKYKNMLNLPIIPVMVASYFASVFGFVMDLLPKQVLSYLVVSIYKYT 136
           IIL  + VM   ++K      + II VM+      +   +M+ +    +S ++V IY   
Sbjct: 18  IILVIINVMMIMIIKIMMNAMMEIILVMIDVMTIMIIKMMMNAM----MSIILVMIYVII 73

Query: 137 VDILYMPFCTPLSGFAKV----TYIYGIIKSGNADAVSLT 172
           + IL M      +GFA +    + + GI+K  N   ++ T
Sbjct: 74  LMILMMKIAFSFAGFAALNAFESTLTGIVKKANVTDLACT 113


>SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)
          Length = 345

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 83  YVMFYFVLKYKNMLNLPIIPVMVASYFASVFGFVMDLLPKQVLSYLVVSIYKYTVDILYM 142
           Y M YF L+Y+ M+    I V + S++   F  V      Q L+Y +VS    TV  +  
Sbjct: 47  YFMLYFHLQYRTMVTTTRISVAIVSFWILSFTVVTVGYYNQELAY-IVSALSITVCFMVS 105

Query: 143 PFC 145
             C
Sbjct: 106 AVC 108


>SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046)
          Length = 775

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 139 ILYMPFCTPLSGFAKVTYIYGIIKSGNADAVSLTTWIISVLTNLARVFTVYVDSGDGKLL 198
           IL+   C    G  +V +I    + GN+ A++LT  ++  + +    F +YV S  G L 
Sbjct: 397 ILFYTCCVADLGI-RVNFIDTFCQKGNS-AITLTIGVVCAIVHFG--FFLYVTSLTGNLY 452

Query: 199 ANFIISTLLS 208
           +N++I  +++
Sbjct: 453 SNYVIMNVIT 462


>SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 27/166 (16%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 4   VPYLIEIFANALSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNY 63
           +PYL+ +      T  +    + ++P  + +        + +  M    I + +  +Y Y
Sbjct: 42  IPYLLHVMYCTRITYLLHVMYYARIPYFLHVMYYARIPYL-LHVMYCTRITYLLHVMY-Y 99

Query: 64  TNKYNIMTYMEYPIILFQVYVMFYFVLKY-KNMLNLPIIPVMVASYFASVFGFVMDLLPK 122
           T    ++  M Y  I + ++VM+Y  + Y  +++    IP ++   + +   +++ ++  
Sbjct: 100 TRITYLLHVMYYTRIPYLLHVMYYTRIPYLLHVMYYTRIPYLLHVMYYTRIPYLLHVMYY 159

Query: 123 QVLSYLVVSIY----KYTVDILY---MPFCTPLSGFAKVTYIYGII 161
             + YL+  +Y     Y + ++Y   +P+   +  +A++ Y+  ++
Sbjct: 160 TRIPYLLHVMYYTRIPYLLHVMYYTRIPYLLHVMYYARIPYLLHVM 205


>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
          Length = 385

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 31  IMSIREKRSAEGIYIQAMLMEI------IGFTIMSLY-NYTNKYNIMTYMEYPIILFQVY 83
           IM IR+K  A  +++    +E+      +G  I+S   +  N    +T+ +YP+ +   +
Sbjct: 258 IMLIRDKHKALAVFLFDYTIELLYCSVLVGTAILSRPPSEINALYTLTFRDYPLEILAKF 317

Query: 84  VMFYFVLKYKNMLNLPIIPVMVASYFASVF 113
           + FY V    +  N P+I + + +   ++F
Sbjct: 318 LSFYPVFTLSS--NFPLICITLRNNLLTLF 345


>SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)
          Length = 836

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 55  FTIMSLYNYTNKYNIMTYMEYPIILFQVYVMFYF--VLKYKNMLNLPIIPVMVASYFASV 112
           FT+    NY + Y  +  + Y +++  +  +F F  V+  +N   +  I   + +++A  
Sbjct: 675 FTVFLECNYHSSYQFLVLIFYIMVMAVLVTIFSFNEVIDEENNYEVKWISFAMFNWYAIT 734

Query: 113 FGFVM---DLLPKQVLSYLVVSIYKYTVDI---LYMP 143
           F +V+    L  K+ +  L +  + Y V++   LY+P
Sbjct: 735 FFYVVFQFGLYRKEKIILLALMDFFYAVNLLGFLYLP 771


>SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)
          Length = 554

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 62  NYTNKYNIMTYMEYPIILFQVYVMFYFVLKYKNMLNLP------IIPVMVASYFAS--VF 113
           ++ NK  ++      ++ F V++ + ++++   +  +P      ++ +M  S       F
Sbjct: 98  HWQNKAFVLWTFSLGLVFFAVFIPYIYLVQIAKLRGIPPSQGSLMVGLMCISGTVGKIAF 157

Query: 114 GFVMDLLPKQVLSYLVVSIYKYTVDILYMPFCTPLSGFAKVTYIYGIIKSGNADAVSLTT 173
           G + D+     L  L  S+    +     PF     G      ++G I SG+   ++L T
Sbjct: 158 GRLADVRWVNRLYLLQASLVVIAIGACIFPFLRSFPGLLTYALLHGFIDSGSGVLLALVT 217


>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1391

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/78 (23%), Positives = 33/78 (42%)

Query: 109 FASVFGFVMDLLPKQVLSYLVVSIYKYTVDILYMPFCTPLSGFAKVTYIYGIIKSGNADA 168
           F  +FG + D+ P + ++ L V+     V+    P     +GF     ++G+     A  
Sbjct: 28  FKVIFGALGDMKPSKRITLLQVAALVSAVNTTLSPLSRDYAGFVVYVVVFGVCDGCFAVM 87

Query: 169 VSLTTWIISVLTNLARVF 186
            S+ T  I    ++  VF
Sbjct: 88  FSMGTHYIVGTEDMPVVF 105


>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 882

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 90  LKYKNMLNLPIIPVMVASYFASVFGFVMDLLPKQVLSYLV 129
           L  +  ++  II  ++ SYF  V   + D +PK ++++LV
Sbjct: 782 LTEREQMDSDIIRKLIKSYFVIVRKSIQDSVPKAIMAFLV 821


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.331    0.144    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,869,466
Number of Sequences: 59808
Number of extensions: 242820
Number of successful extensions: 811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 11
length of query: 260
length of database: 16,821,457
effective HSP length: 81
effective length of query: 179
effective length of database: 11,977,009
effective search space: 2143884611
effective search space used: 2143884611
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 59 (27.9 bits)