Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001960-TA|BGIBMGA001960-PA|IPR012462|Protein of unknown
function DUF1671
         (212 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   4.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.5  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    21   5.5  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    21   9.6  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)

Query: 9   HESLVSKQTGKSYLIKGNYEYYHYLCDGFDDR 40
           H  +V +  G S L  G    Y YL     DR
Sbjct: 149 HVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDR 180


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)

Query: 9   HESLVSKQTGKSYLIKGNYEYYHYLCDGFDDR 40
           H  +V +  G S L  G    Y YL     DR
Sbjct: 309 HVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDR 340


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)

Query: 9   HESLVSKQTGKSYLIKGNYEYYHYLCDGFDDR 40
           H  +V +  G S L  G    Y YL     DR
Sbjct: 309 HVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDR 340


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 25   GNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMKLNHMDVAVPSIREIQ 72
            G +  Y+ +C+    RGW         I  +  L++  V+   I EI+
Sbjct: 2597 GGFLAYYEICERVKKRGWTVTRDPQGRIGPYAYLSNQWVSYDDIAEIR 2644


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative
          cytochrome P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 60 HMDVAVPSIREIQSILVDLEDKP 82
          H DV    ++E++ +L D+  KP
Sbjct: 15 HKDVQETILQEMRDVLGDIHAKP 37


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
          monooxygenase protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 59 NHMDVAVPSIREIQSILVDLEDKP 82
          NH  V    ++E++ +L D + KP
Sbjct: 14 NHPTVQEEIVQEMKDVLGDTKKKP 37


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.141    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,210
Number of Sequences: 317
Number of extensions: 2536
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 212
length of database: 114,650
effective HSP length: 54
effective length of query: 158
effective length of database: 97,532
effective search space: 15410056
effective search space used: 15410056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)